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Strain identifier

BacDive ID: 134001

Type strain: Yes

Species: Litchfieldia salsa

Strain Designation: A24

Strain history: <- M A Amoozegar, Univ. of Tehran, Iran

NCBI tax ID(s): 930152 (species)

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For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 31030

BacDive-ID: 134001

keywords: 16S sequence, Bacteria, aerobe, spore-forming, Gram-positive, motile, rod-shaped

description: Litchfieldia salsa A24 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from hypersaline environment.

NCBI tax id

  • NCBI tax id: 930152
  • Matching level: species

strain history: <- M A Amoozegar, Univ. of Tehran, Iran

doi: 10.13145/bacdive134001.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Bacillaceae
  • genus: Litchfieldia
  • species: Litchfieldia salsa
  • full scientific name: Litchfieldia salsa corrig. (Amoozegar et al. 2013) Gupta et al. 2020

  • synonyms

    @refsynonym
    20215Litchfieldia salsus
    20215Bacillus salsus

@ref: 31030

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Caryophanales

family: Bacillaceae

genus: Bacillus

species: Bacillus salsus

strain designation: A24

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
31030positive4 µm0.5 µmrod-shapedyes
67771rod-shaped
67771positive
69480yes96.937
69480positive96.661

pigmentation

  • @ref: 31030
  • production: yes

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
31030positivegrowth10-40
31030positiveoptimum35mesophilic
67771positivegrowth35mesophilic

culture pH

@refabilitytypepHPH range
31030positivegrowth7.0-9.0alkaliphile
31030positiveoptimum8

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
31030aerobe
67771aerobe

spore formation

@refspore formationtype of sporeconfidence
31030yes
67771yesendospore
69480yes95.916

halophily

@refsaltgrowthtested relationconcentrationhalophily levelconfidence
31030NaClpositivegrowth0.5-7.5 %
31030NaClpositiveoptimum3 %
69480non-halophilic78.83

observation

  • @ref: 67771
  • observation: quinones: MK-7(94%), MK-6(4%)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3103016449alanine+carbon source
3103022599arabinose+carbon source
3103017057cellobiose+carbon source
3103028757fructose+carbon source
3103028260galactose+carbon source
3103017234glucose+carbon source
3103017306maltose+carbon source
3103029864mannitol+carbon source
3103037684mannose+carbon source
3103026271proline+carbon source
3103016634raffinose+carbon source
3103033942ribose+carbon source
3103017992sucrose+carbon source
3103027082trehalose+carbon source
3103018222xylose+carbon source
310304853esculin+hydrolysis
3103017632nitrate+reduction

enzymes

@refvalueactivityec
31030catalase+1.11.1.6
31030cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
31030hypersaline environment
67771From saline soil, hypersaline lakeAran-Bidgol Salt LakeIranIRNAsia

isolation source categories

  • Cat1: #Condition
  • Cat2: #Saline

taxonmaps

  • @ref: 69479
  • File name: preview.99_15764.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_845;97_988;98_11890;99_15764&stattab=map
  • Last taxonomy: Litchfieldia salsus subclade
  • 16S sequence: HQ433466
  • Sequence Identity:
  • Total samples: 416
  • soil counts: 266
  • aquatic counts: 124
  • animal counts: 16
  • plant counts: 10

Sequence information

16S sequences

  • @ref: 31030
  • description: Bacillus salsus strain A24 16S ribosomal RNA gene, partial sequence
  • accession: HQ433466
  • length: 1466
  • database: nuccore
  • NCBI tax ID: 930152

GC content

  • @ref: 67771
  • GC-content: 35.9

External links

@ref: 31030

culture collection no.: IBRC-M10078, KCTC 13816, IBRC-M 10078, CIP 110635

straininfo link

@refpassport
20218http://www.straininfo.net/strains/891009
20218http://www.straininfo.net/strains/891010

Reference

@idauthorstitledoi/urljournalpubmedID_cross_reference
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.StrainInfo introduces electronic passports for microorganisms.10.1016/j.syapm.2013.11.002Syst Appl Microbiol. 37: 42-50 201424321274
2736010.1099/ijs.0.050120-023504967
31030Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172877604127360
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa1025Nucleic Acids Res. 49: D498-D508 202033211880
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes