Strain identifier
BacDive ID: 134001
Type strain:
Species: Litchfieldia salsa
Strain Designation: A24
Strain history: <- M A Amoozegar, Univ. of Tehran, Iran
NCBI tax ID(s): 930152 (species)
version 8.1 (current version)
General
@ref: 31030
BacDive-ID: 134001
keywords: 16S sequence, Bacteria, aerobe, spore-forming, Gram-positive, motile, rod-shaped
description: Litchfieldia salsa A24 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from hypersaline environment.
NCBI tax id
- NCBI tax id: 930152
- Matching level: species
strain history
- @ref: 67771
- history: <- M A Amoozegar, Univ. of Tehran, Iran
doi: 10.13145/bacdive134001.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Litchfieldia
- species: Litchfieldia salsa
- full scientific name: Litchfieldia salsa corrig. (Amoozegar et al. 2013) Gupta et al. 2020
synonyms
@ref synonym 20215 Litchfieldia salsus 20215 Bacillus salsus
@ref: 31030
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Caryophanales
family: Bacillaceae
genus: Bacillus
species: Bacillus salsus
strain designation: A24
type strain: yes
Morphology
cell morphology
@ref | gram stain | cell length | cell width | cell shape | motility |
---|---|---|---|---|---|
31030 | positive | 4 µm | 0.5 µm | rod-shaped | yes |
67771 | rod-shaped | ||||
67771 | positive |
pigmentation
- @ref: 31030
- production: yes
Culture and growth conditions
culture medium
- @ref: 116248
- name: CIP Medium 13
- growth: yes
- link: https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
31030 | positive | growth | 10-40 | |
31030 | positive | optimum | 35 | mesophilic |
67771 | positive | growth | 35 | mesophilic |
culture pH
@ref | ability | type | pH | PH range |
---|---|---|---|---|
31030 | positive | growth | 7.0-9.0 | alkaliphile |
31030 | positive | optimum | 8 |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
31030 | aerobe |
67771 | aerobe |
spore formation
@ref | spore formation | type of spore |
---|---|---|
31030 | yes | |
67771 | yes | endospore |
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
31030 | NaCl | positive | growth | 0.5-7.5 % |
31030 | NaCl | positive | optimum | 3 % |
observation
- @ref: 67771
- observation: quinones: MK-7(94%), MK-6(4%)
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
31030 | 16449 | alanine | + | carbon source |
31030 | 22599 | arabinose | + | carbon source |
31030 | 17057 | cellobiose | + | carbon source |
31030 | 28757 | fructose | + | carbon source |
31030 | 28260 | galactose | + | carbon source |
31030 | 17234 | glucose | + | carbon source |
31030 | 17306 | maltose | + | carbon source |
31030 | 29864 | mannitol | + | carbon source |
31030 | 37684 | mannose | + | carbon source |
31030 | 26271 | proline | + | carbon source |
31030 | 16634 | raffinose | + | carbon source |
31030 | 33942 | ribose | + | carbon source |
31030 | 17992 | sucrose | + | carbon source |
31030 | 27082 | trehalose | + | carbon source |
31030 | 18222 | xylose | + | carbon source |
31030 | 4853 | esculin | + | hydrolysis |
31030 | 17632 | nitrate | + | reduction |
enzymes
@ref | value | activity | ec |
---|---|---|---|
31030 | catalase | + | 1.11.1.6 |
31030 | cytochrome oxidase | + | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
31030 | hypersaline environment | ||||
67771 | From saline soil, hypersaline lake | Aran-Bidgol Salt Lake | Iran | IRN | Asia |
isolation source categories
- Cat1: #Condition
- Cat2: #Saline
taxonmaps
- @ref: 69479
- File name: preview.99_15764.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_845;97_988;98_11890;99_15764&stattab=map
- Last taxonomy: Litchfieldia salsus subclade
- 16S sequence: HQ433466
- Sequence Identity:
- Total samples: 416
- soil counts: 266
- aquatic counts: 124
- animal counts: 16
- plant counts: 10
Sequence information
16S sequences
- @ref: 31030
- description: Bacillus salsus strain A24 16S ribosomal RNA gene, partial sequence
- accession: HQ433466
- length: 1466
- database: nuccore
- NCBI tax ID: 930152
GC content
- @ref: 67771
- GC-content: 35.9
External links
@ref: 31030
culture collection no.: IBRC-M10078, KCTC 13816, IBRC-M 10078, CIP 110635
Reference
@id | authors | title | doi/url | ID_cross_reference | pubmed | journal | catalogue |
---|---|---|---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||||
31030 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 27360 | 28776041 | ||
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | 33211880 | Nucleic Acids Res. 49: D498-D508 2020 | ||
67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | ||||
116248 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110635 | Collection of Institut Pasteur (CIP 110635) |