Strain identifier

BacDive ID: 134000

Type strain: Yes

Species: Cohaesibacter haloalkalitolerans

Strain Designation: JC131

NCBI tax ID(s): 1162980 (species)

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General

@ref: 31029

BacDive-ID: 134000

keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, Gram-negative, motile, rod-shaped

description: Cohaesibacter haloalkalitolerans JC131 is a facultative anaerobe, Gram-negative, motile bacterium that was isolated from hypersaline environment.

NCBI tax id

  • NCBI tax id: 1162980
  • Matching level: species

doi: 10.13145/bacdive134000.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Cohaesibacteraceae
  • genus: Cohaesibacter
  • species: Cohaesibacter haloalkalitolerans
  • full scientific name: Cohaesibacter haloalkalitolerans Sultanpuram et al. 2013

@ref: 31029

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Hyphomicrobiales

family: Cohaesibacteraceae

genus: Cohaesibacter

species: Cohaesibacter haloalkalitolerans

strain designation: JC131

type strain: yes

Morphology

cell morphology

  • @ref: 31029
  • gram stain: negative
  • cell length: 1.8 µm
  • cell width: 0.45 µm
  • cell shape: rod-shaped
  • motility: yes

pigmentation

  • @ref: 31029
  • production: no

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
31029positivegrowth15-40
31029positiveoptimum27.5mesophilic

culture pH

@refabilitytypepHPH range
31029positivegrowth5.5-9.5alkaliphile
31029positiveoptimum7.5

Physiology and metabolism

oxygen tolerance

  • @ref: 31029
  • oxygen tolerance: facultative anaerobe

halophily

@refsaltgrowthtested relationconcentration
31029NaClpositivegrowth01-20 %
31029NaClpositiveoptimum3.5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3102916000ethanolamine+carbon source
31029620642,3-butanediol+carbon source
3102930089acetate+carbon source
3102921217L-alaninamide+carbon source
3102916449alanine+carbon source
31029286442-oxopentanoate+carbon source
3102922599arabinose+carbon source
3102916947citrate+carbon source
3102916236ethanol+carbon source
3102933984fucose+carbon source
3102928260galactose+carbon source
3102924175galacturonate+carbon source
3102924265gluconate+carbon source
310295417glucosamine+carbon source
3102917234glucose+carbon source
3102932323glucuronamide+carbon source
3102929987glutamate+carbon source
3102917754glycerol+carbon source
3102917596inosine+carbon source
3102917716lactose+carbon source
3102915792malonate+carbon source
3102937684mannose+carbon source
3102937657methyl D-glucoside+carbon source
3102950048phenylethylamine+carbon source
3102928044phenylalanine+carbon source
3102926271proline+carbon source
3102917272propionate+carbon source
3102915361pyruvate+carbon source
3102951850methyl pyruvate+carbon source
3102926546rhamnose+carbon source
3102917748thymidine+carbon source
3102916199urea+carbon source
3102916704uridine+carbon source
3102917632nitrate+reduction

metabolite production

  • @ref: 31029
  • Chebi-ID: 35581
  • metabolite: indole
  • production: yes

metabolite tests

  • @ref: 31029
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: +

enzymes

@refvalueactivityec
31029cytochrome oxidase+1.9.3.1
31029urease+3.5.1.5

Isolation, sampling and environmental information

isolation

  • @ref: 31029
  • sample type: hypersaline environment

isolation source categories

  • Cat1: #Condition
  • Cat2: #Saline

taxonmaps

  • @ref: 69479
  • File name: preview.99_176651.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_5;96_10777;97_13039;98_115454;99_176651&stattab=map
  • Last taxonomy: Cohaesibacter haloalkalitolerans subclade
  • 16S sequence: HE774678
  • Sequence Identity:
  • Total samples: 5
  • aquatic counts: 4
  • plant counts: 1

Sequence information

16S sequences

  • @ref: 31029
  • description: Cohaesibacter haloalkalitolerans partial 16S rRNA gene, type strain JC131T, isolate COV1
  • accession: HE774678
  • length: 1416
  • database: nuccore
  • NCBI tax ID: 1162980

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Cohaesibacter haloalkalitolerans JC131GCA_003574655contigncbi1162980
66792Cohaesibacter haloalkalitolerans JC1312833556347draftimg1162980

GC content

  • @ref: 31029
  • GC-content: 54.6

External links

@ref: 31029

culture collection no.: KCTC 32038, NBRC 109022

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny23811140Cohaesibacter haloalkalitolerans sp. nov., isolated from a soda lake, and emended description of the genus Cohaesibacter.Sultanpuram VR, Lodha TD, Chintalapati VR, Chintalapati SInt J Syst Evol Microbiol10.1099/ijs.0.050112-02013Alphaproteobacteria/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/microbiology, India, Lakes/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Triterpenes/chemistry, Ubiquinone/chemistryGenetics
Phylogeny31339485Cohaesibacter intestini sp. nov., isolated from the intestine of abalone, Haliotis discus hannai.Liu M, Huang Z, Zhao Q, Shao ZInt J Syst Evol Microbiol10.1099/ijsem.0.0036102019Alphaproteobacteria/classification, Animals, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Gastropoda/*microbiology, Intestines/*microbiology, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Ubiquinone/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorstitledoi/urlID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
31029Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172735928776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/