Strain identifier

BacDive ID: 133997

Type strain: Yes

Species: Flavobacterium aquaticum

Strain Designation: JC164

Strain history: <- Ch Sasikala, JNT Univ., India

NCBI tax ID(s): 1236486 (species)

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General

@ref: 31024

BacDive-ID: 133997

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, rod-shaped

description: Flavobacterium aquaticum JC164 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from freshwater .

NCBI tax id

  • NCBI tax id: 1236486
  • Matching level: species

strain history

  • @ref: 67771
  • history: <- Ch Sasikala, JNT Univ., India

doi: 10.13145/bacdive133997.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Flavobacterium
  • species: Flavobacterium aquaticum
  • full scientific name: Flavobacterium aquaticum Subhash et al. 2013

@ref: 31024

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Flavobacterium

species: Flavobacterium aquaticum

strain designation: JC164

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
31024negative2.5 µm0.35 µmrod-shapedno
67771rod-shapedno
67771negative
69480negative99.999

pigmentation

  • @ref: 31024
  • production: yes

Culture and growth conditions

culture temp

  • @ref: 67771
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

culture pH

@refabilitytypepHPH range
31024positivegrowth6.5-10alkaliphile
31024positiveoptimum8

Physiology and metabolism

oxygen tolerance

  • @ref: 67771
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.997

halophily

  • @ref: 31024
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-0.5 %

observation

  • @ref: 31024
  • observation: aggregates in clumps

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3102430089acetate+carbon source
3102435391aspartate+carbon source
3102428757fructose+carbon source
3102428260galactose+carbon source
3102417234glucose+carbon source
3102417716lactose+carbon source
3102429864mannitol+carbon source
3102437684mannose+carbon source
3102415361pyruvate+carbon source
3102426546rhamnose+carbon source
3102417992sucrose+carbon source

enzymes

@refvalueactivityec
31024catalase+1.11.1.6
31024cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitude
31024freshwater (river, lake, pond)
67771From a water sample from a rice field at JamdihMau, Uttar PradeshIndiaINDAsia26.129483.5822

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Freshwater
#Environmental#Aquatic#Lake (large)
#Environmental#Aquatic#Pond (small)
#Environmental#Aquatic#River (Creek)

Sequence information

16S sequences

  • @ref: 31024
  • description: Flavobacterium aquaticum partial 16S rRNA gene, type strain JC164T, isolate B41
  • accession: HE995762
  • length: 1371
  • database: nuccore
  • NCBI tax ID: 1236486

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Flavobacterium aquaticum CGMCC 1.12398GCA_003259835scaffoldncbi1236486
66792Flavobacterium aquaticum strain CGMCC 1.123981236486.3wgspatric1236486
66792Flavobacterium aquaticum CGMCC 1.123982718217678draftimg1236486

GC content

@refGC-contentmethod
3102439.6
6777139.6high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno86.922yes
flagellatedno95.213yes
gram-positiveno98.941no
anaerobicno97.927yes
aerobicyes82.384no
halophileno93.188yes
spore-formingno95.255no
glucose-utilyes84.364yes
thermophileno98.698yes
glucose-fermentno92.578no

External links

@ref: 31024

culture collection no.: KCTC 32196, CGMCC 1.12398, LMG 27251

straininfo link

  • @ref: 91663
  • straininfo: 381393

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny23543500Flavobacterium aquaticum sp. nov., isolated from a water sample of a rice field.Subhash Y, Sasikala C, Ramana CVInt J Syst Evol Microbiol10.1099/ijs.0.050047-02013Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Flavobacterium/*classification/genetics/isolation & purification, India, Molecular Sequence Data, Nucleic Acid Hybridization, Oryza/*microbiology, Phosphatidylethanolamines/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Triterpenes/analysis, *Water Microbiology, beta Carotene/analysisGenetics
Phylogeny33555245Flavobacterium lotistagni sp. nov. and Flavobacterium celericrescens sp. nov., isolated from freshwater habitats.Wu JH, You YX, Young CC, Kwon SW, Chen WMInt J Syst Evol Microbiol10.1099/ijsem.0.0046822021
Phylogeny35059830Flavobacterium proteolyticum sp. nov., isolated from aquaculture water.Du J, Liu Y, Pei T, Li A, Deng MR, Zhu HArch Microbiol10.1007/s00203-021-02744-22022Aquaculture, Bacterial Typing Techniques, DNA, Bacterial/genetics, *Flavobacterium/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *WaterTranscriptome
Phylogeny35731344Description of Flavobacterium cyclinae sp. nov. and Flavobacterium channae sp. nov., isolated from the intestines of Cyclina sinensis (Corb shell) and Channa argus (Northern snakehead).Kang S, Lee JY, Han JE, Jeong YS, Gim DH, Bae JWJ Microbiol10.1007/s12275-022-2075-22022Animals, Bacterial Typing Techniques, Bivalvia, Cordyceps, DNA, Bacterial/genetics, *Fatty Acids/analysis, Fishes, *Flavobacterium, Intestines, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2Transcriptome

Reference

@idauthorstitledoi/urlID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
31024Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172735428776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
91663Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID381393.1