Strain identifier

BacDive ID: 133989

Type strain: Yes

Species: Rudaibacter terrae

Strain Designation: 5GHs34-4

Culture col. no.: KACC 15523, NBRC 108754

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General

@ref: 31014

BacDive-ID: 133989

keywords: rod-shaped, gram-positive, aerobe, Bacteria, 16S sequence

description: Rudaibacter terrae 5GHs34-4 is an aerobe, gram-positive, rod-shaped bacterium that was isolated from soil.

doi: 10.13145/bacdive133989.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinobacteria
  • domain: Bacteria
  • phylum: Actinobacteria
  • class: Actinobacteria
  • order: Micrococcales
  • family: Microbacteriaceae
  • genus: Rudaibacter
  • species: Rudaibacter terrae
  • full scientific name: Rudaibacter terrae Kim et al. 2013

@ref: 31014

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Micrococcales

family: Microbacteriaceae

genus: Rudaibacter

species: Rudaibacter terrae

strain designation: 5GHs34-4

type strain: yes

Morphology

cell morphology

  • @ref: 31014
  • gram stain: positive
  • cell length: 1.45 µm
  • cell width: 0.6 µm
  • cell shape: rod-shaped
  • motility: no

pigmentation

  • @ref: 31014
  • production: yes

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
31014positivegrowth10-37
31014positiveoptimum29mesophilic

culture pH

@refabilitytypepH
31014positivegrowth5.0-9.0
31014positiveoptimum7

Physiology and metabolism

oxygen tolerance

  • @ref: 31014
  • oxygen tolerance: aerobe

spore formation

  • @ref: 31014
  • spore formation: no

halophily

  • @ref: 31014
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-3 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
31014168082-dehydro-D-gluconate+carbon source
3101422599arabinose+carbon source
3101424265gluconate+carbon source
3101417234glucose+carbon source
3101417306maltose+carbon source
3101429864mannitol+carbon source
3101437684mannose+carbon source
3101428053melibiose+carbon source
3101433942ribose+carbon source
3101417992sucrose+carbon source
310144853esculin+hydrolysis
3101417632nitrate+reduction

enzymes

@refvalueactivityec
31014acid phosphatase+3.1.3.2
31014alpha-galactosidase+3.2.1.22

Isolation, sampling and environmental information

isolation

  • @ref: 31014
  • sample type: soil

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Sequence information

16S sequences

  • @ref: 31014
  • description: Rudaibacter terrae strain 5GHs34-4 16S ribosomal RNA gene, partial sequence
  • accession: JQ639054
  • length: 1466
  • database: nuccore
  • NCBI tax ID: 1162969

GC content

  • @ref: 31014
  • GC-content: 64

External links

@ref: 31014

culture collection no.: KACC 15523, NBRC 108754

straininfo link

@refpassport
20218http://www.straininfo.net/strains/891825
20218http://www.straininfo.net/strains/891826

Reference

@idauthorstitledoi/urljournalpubmedID_cross_reference
20215D.Gleim, M.Kracht, N.Weiss et. al.Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes sincehttp://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.html
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.StrainInfo introduces electronic passports for microorganisms.10.1016/j.syapm.2013.11.002Syst Appl Microbiol. 37: 42-50 201424321274
2734410.1099/ijs.0.049817-0
31014Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-1727344