Strain identifier

BacDive ID: 133987

Type strain: Yes

Species: Algibacter undariae

Strain Designation: WS-MY9

Strain history: <- JH Yoon, Sungkyunkwan Univ.

NCBI tax ID(s): 1285464 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 31011

BacDive-ID: 133987

keywords: 16S sequence, Bacteria, aerobe, Gram-negative, motile, rod-shaped

description: Algibacter undariae WS-MY9 is an aerobe, Gram-negative, motile bacterium that was isolated from plant associated.

NCBI tax id

  • NCBI tax id: 1285464
  • Matching level: species

strain history

  • @ref: 67771
  • history: <- JH Yoon, Sungkyunkwan Univ.

doi: 10.13145/bacdive133987.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Algibacter
  • species: Algibacter undariae
  • full scientific name: Algibacter undariae Park et al. 2013

@ref: 31011

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Algibacter

species: Algibacter undariae

strain designation: WS-MY9

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityflagellum arrangement
31011negative3.35 µm0.55 µmrod-shapedyesgliding
67771rod-shapedyesgliding
67771negative

pigmentation

  • @ref: 31011
  • production: yes

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
31011positivegrowth04-35
31011positiveoptimum25mesophilic
63011positivegrowth30mesophilic
67771positivegrowth25mesophilic

culture pH

@refabilitytypepH
31011positivegrowth5.0-8.0
31011positiveoptimum7.5

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
63011aerobe
67771aerobe

halophily

@refsaltgrowthtested relationconcentration
31011NaClpositivegrowth0.5-6.0 %
31011NaClpositiveoptimum2 %

observation

@refobservation
31011aggregates in clumps
67771quinones: MK-6

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3101128757fructose+carbon source
3101128260galactose+carbon source
3101117234glucose+carbon source
3101137684mannose+carbon source
3101118222xylose+carbon source

enzymes

@refvalueactivityec
31011acid phosphatase+3.1.3.2
31011alkaline phosphatase+3.1.3.1
31011catalase+1.11.1.6
31011cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typesampling dategeographic locationcountryorigin.countrycontinent
31011plant associated
63011Brown algae reservoir2011WandoRepublic of KoreaKORAsia
67771From brown algae reservoirWandoRepublic of KoreaKORAsia

isolation source categories

  • Cat1: #Host
  • Cat2: #Plants

taxonmaps

  • @ref: 69479
  • File name: preview.99_115088.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_107;96_3202;97_3930;98_5003;99_115088&stattab=map
  • Last taxonomy: Algibacter undariae
  • 16S sequence: KC261664
  • Sequence Identity:
  • Total samples: 14
  • aquatic counts: 14

Sequence information

16S sequences

  • @ref: 31011
  • description: Algibacter undariae strain WS-MY9 16S ribosomal RNA gene, partial sequence
  • accession: KC261664
  • length: 1441
  • database: nuccore
  • NCBI tax ID: 1285464

GC content

@refGC-content
3101135
6777135.0

External links

@ref: 31011

culture collection no.: KCTC 32259, CCUG 63684

straininfo link

  • @ref: 91657
  • straininfo: 409442

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny23625264Algibacter undariae sp. nov., isolated from a brown algae reservoir.Park S, Lee JS, Lee KC, Yoon JHInt J Syst Evol Microbiol10.1099/ijs.0.049734-02013Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Flavobacteriaceae/*classification/genetics/isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, Phaeophyta/*microbiology, Phosphatidylethanolamines/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/analysisGenetics
Phylogeny23733003Algibacter miyuki sp. nov., a member of the family Flavobacteriaceae isolated from leachate of a brown algae reservoir.Park S, Jung YT, Yoon JHAntonie Van Leeuwenhoek10.1007/s10482-013-9944-y2013Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Flavobacteriaceae/*classification/genetics/*isolation & purification, Geologic Sediments/*microbiology, Molecular Sequence Data, *Phaeophyta, Phosphatidylethanolamines, Phylogeny, Polysaccharides, Bacterial, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seawater/*microbiologyGenetics
Phylogeny23996835Algibacter wandonensis sp. nov., isolated from sediment around a brown algae (Undaria pinnatifida) reservoir.Yoon JH, Park SInt J Syst Evol Microbiol10.1099/ijs.0.053983-02013Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/genetics/isolation & purification, Geologic Sediments/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phosphatidylethanolamines/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Undaria, Vitamin K 2/analogs & derivatives/chemistryGenetics

Reference

@idauthorstitledoi/urlID_cross_referencepubmedcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
31011Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172734128776041
63011Curators of the CCUGhttps://www.ccug.se/strain?id=63684Culture Collection University of Gothenburg (CCUG) (CCUG 63684)
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
91657Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID409442.1