Strain identifier
BacDive ID: 133987
Type strain:
Species: Algibacter undariae
Strain Designation: WS-MY9
Strain history: <- JH Yoon, Sungkyunkwan Univ.
NCBI tax ID(s): 1285464 (species)
version 8.1 (current version)
General
@ref: 31011
BacDive-ID: 133987
keywords: 16S sequence, Bacteria, aerobe, Gram-negative, motile, rod-shaped
description: Algibacter undariae WS-MY9 is an aerobe, Gram-negative, motile bacterium that was isolated from plant associated.
NCBI tax id
- NCBI tax id: 1285464
- Matching level: species
strain history
- @ref: 67771
- history: <- JH Yoon, Sungkyunkwan Univ.
doi: 10.13145/bacdive133987.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Flavobacteriia
- order: Flavobacteriales
- family: Flavobacteriaceae
- genus: Algibacter
- species: Algibacter undariae
- full scientific name: Algibacter undariae Park et al. 2013
@ref: 31011
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Flavobacteriaceae
genus: Algibacter
species: Algibacter undariae
strain designation: WS-MY9
type strain: yes
Morphology
cell morphology
@ref | gram stain | cell length | cell width | cell shape | motility | flagellum arrangement |
---|---|---|---|---|---|---|
31011 | negative | 3.35 µm | 0.55 µm | rod-shaped | yes | gliding |
67771 | rod-shaped | yes | gliding | |||
67771 | negative |
pigmentation
- @ref: 31011
- production: yes
Culture and growth conditions
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
31011 | positive | growth | 04-35 | |
31011 | positive | optimum | 25 | mesophilic |
63011 | positive | growth | 30 | mesophilic |
67771 | positive | growth | 25 | mesophilic |
culture pH
@ref | ability | type | pH |
---|---|---|---|
31011 | positive | growth | 5.0-8.0 |
31011 | positive | optimum | 7.5 |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
63011 | aerobe |
67771 | aerobe |
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
31011 | NaCl | positive | growth | 0.5-6.0 % |
31011 | NaCl | positive | optimum | 2 % |
observation
@ref | observation |
---|---|
31011 | aggregates in clumps |
67771 | quinones: MK-6 |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
31011 | 28757 | fructose | + | carbon source |
31011 | 28260 | galactose | + | carbon source |
31011 | 17234 | glucose | + | carbon source |
31011 | 37684 | mannose | + | carbon source |
31011 | 18222 | xylose | + | carbon source |
enzymes
@ref | value | activity | ec |
---|---|---|---|
31011 | acid phosphatase | + | 3.1.3.2 |
31011 | alkaline phosphatase | + | 3.1.3.1 |
31011 | catalase | + | 1.11.1.6 |
31011 | cytochrome oxidase | + | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
@ref | sample type | sampling date | geographic location | country | origin.country | continent |
---|---|---|---|---|---|---|
31011 | plant associated | |||||
63011 | Brown algae reservoir | 2011 | Wando | Republic of Korea | KOR | Asia |
67771 | From brown algae reservoir | Wando | Republic of Korea | KOR | Asia |
isolation source categories
- Cat1: #Host
- Cat2: #Plants
taxonmaps
- @ref: 69479
- File name: preview.99_115088.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_107;96_3202;97_3930;98_5003;99_115088&stattab=map
- Last taxonomy: Algibacter undariae
- 16S sequence: KC261664
- Sequence Identity:
- Total samples: 14
- aquatic counts: 14
Sequence information
16S sequences
- @ref: 31011
- description: Algibacter undariae strain WS-MY9 16S ribosomal RNA gene, partial sequence
- accession: KC261664
- length: 1441
- database: nuccore
- NCBI tax ID: 1285464
GC content
@ref | GC-content |
---|---|
31011 | 35 |
67771 | 35.0 |
External links
@ref: 31011
culture collection no.: KCTC 32259, CCUG 63684
straininfo link
- @ref: 91657
- straininfo: 409442
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 23625264 | Algibacter undariae sp. nov., isolated from a brown algae reservoir. | Park S, Lee JS, Lee KC, Yoon JH | Int J Syst Evol Microbiol | 10.1099/ijs.0.049734-0 | 2013 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Flavobacteriaceae/*classification/genetics/isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, Phaeophyta/*microbiology, Phosphatidylethanolamines/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/analysis | Genetics |
Phylogeny | 23733003 | Algibacter miyuki sp. nov., a member of the family Flavobacteriaceae isolated from leachate of a brown algae reservoir. | Park S, Jung YT, Yoon JH | Antonie Van Leeuwenhoek | 10.1007/s10482-013-9944-y | 2013 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Flavobacteriaceae/*classification/genetics/*isolation & purification, Geologic Sediments/*microbiology, Molecular Sequence Data, *Phaeophyta, Phosphatidylethanolamines, Phylogeny, Polysaccharides, Bacterial, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seawater/*microbiology | Genetics |
Phylogeny | 23996835 | Algibacter wandonensis sp. nov., isolated from sediment around a brown algae (Undaria pinnatifida) reservoir. | Yoon JH, Park S | Int J Syst Evol Microbiol | 10.1099/ijs.0.053983-0 | 2013 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/genetics/isolation & purification, Geologic Sediments/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phosphatidylethanolamines/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Undaria, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
Reference
@id | authors | title | doi/url | ID_cross_reference | pubmed | catalogue |
---|---|---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
31011 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 27341 | 28776041 | |
63011 | Curators of the CCUG | https://www.ccug.se/strain?id=63684 | Culture Collection University of Gothenburg (CCUG) (CCUG 63684) | |||
67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | ||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
91657 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID409442.1 |