Strain identifier

BacDive ID: 133986

Type strain: Yes

Species: Winogradskyella pulchriflava

Strain Designation: EM106

Strain history: <- SK Rhee, Chungbuk Natl. Univ.

NCBI tax ID(s): 1110688 (species)

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General

@ref: 31002

BacDive-ID: 133986

keywords: 16S sequence, Bacteria, aerobe, Gram-negative, motile, rod-shaped

description: Winogradskyella pulchriflava EM106 is an aerobe, Gram-negative, motile bacterium that was isolated from marine sediment.

NCBI tax id

  • NCBI tax id: 1110688
  • Matching level: species

strain history

  • @ref: 67771
  • history: <- SK Rhee, Chungbuk Natl. Univ.

doi: 10.13145/bacdive133986.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Winogradskyella
  • species: Winogradskyella pulchriflava
  • full scientific name: Winogradskyella pulchriflava Kim et al. 2013

@ref: 31002

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Winogradskyella

species: Winogradskyella pulchriflava

strain designation: EM106

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityflagellum arrangement
31002negative1 µm0.35 µmrod-shapedyesgliding
67771negative

pigmentation

  • @ref: 31002
  • production: yes

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
31002positivegrowth10-35
31002positiveoptimum25mesophilic
67771positivegrowth25mesophilic

culture pH

@refabilitytypepHPH range
31002positivegrowth6.5-9.0alkaliphile
31002positiveoptimum7.5

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
31002aerobe
67771aerobe

halophily

@refsaltgrowthtested relationconcentration
31002NaClpositivegrowth0.5-5 %
31002NaClpositiveoptimum0.75 %

observation

  • @ref: 31002
  • observation: aggregates in clumps

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3100216449alanine+carbon source
3100229016arginine+carbon source
3100235391aspartate+carbon source
3100223652dextrin+carbon source
3100228260galactose+carbon source
3100224175galacturonate+carbon source
3100217234glucose+carbon source
3100229987glutamate+carbon source
3100217306maltose+carbon source
3100226271proline+carbon source
3100217822serine+carbon source
310024853esculin+hydrolysis
3100217632nitrate+reduction

enzymes

@refvalueactivityec
31002acid phosphatase+3.1.3.2
31002alkaline phosphatase+3.1.3.1
31002catalase+1.11.1.6
31002gelatinase+
31002cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
31002marine sediment
67771From marine sedimentRepublic of KoreaKORAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Aquatic#Sediment

taxonmaps

  • @ref: 69479
  • File name: preview.99_65858.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_107;96_1844;97_2213;98_2716;99_65858&stattab=map
  • Last taxonomy: Winogradskyella pulchriflava
  • 16S sequence: JN896598
  • Sequence Identity:
  • Total samples: 29
  • soil counts: 3
  • aquatic counts: 26

Sequence information

16S sequences

  • @ref: 31002
  • description: Winogradskyella pulchriflava strain EM106 16S ribosomal RNA gene, partial sequence
  • accession: JN896598
  • length: 1431
  • database: nuccore
  • NCBI tax ID: 1110688

GC content

  • @ref: 31002
  • GC-content: 33.3

External links

@ref: 31002

culture collection no.: KCTC 23858, NCAIMB 02481, NCAIM B 02481

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny23416570Winogradskyella pulchriflava sp. nov., isolated from marine sediment.Kim SJ, Choi YR, Park SJ, Kim JG, Shin KS, Roh DH, Rhee SKInt J Syst Evol Microbiol10.1099/ijs.0.049502-02013Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Flavobacteriaceae/*classification/genetics/isolation & purification, Geologic Sediments/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seawater/microbiology, Vitamin K 2/analogs & derivatives/analysisGenetics
Phylogeny25979633Winogradskyella eckloniae sp. nov., a marine bacterium isolated from the brown alga Ecklonia cava.Kim JY, Park SH, Seo GY, Kim YJ, Oh DCInt J Syst Evol Microbiol10.1099/ijs.0.0003342015Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/genetics/isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, Phaeophyta/*microbiology, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seawater/microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryGenetics

Reference

@idauthorstitledoi/urlID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
31002Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172733228776041
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/