Strain identifier
BacDive ID: 133983
Type strain: 
Species: Bradyrhizobium diazoefficiens
Strain Designation: 3I1B110, R-12974
Strain history: K. Minamisawa <-- H. H. Keyser USDA 110.
NCBI tax ID(s): 224911 (strain), 1355477 (species)
version 8.1 (current version)
General
@ref: 30992
BacDive-ID: 133983
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, rod-shaped
description: Bradyrhizobium diazoefficiens 3I1B110 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from plant associated.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 1355477 | species |
| 224911 | strain |
strain history
- @ref: 67770
- history: K. Minamisawa <-- H. H. Keyser USDA 110.
doi: 10.13145/bacdive133983.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Nitrobacteraceae
- genus: Bradyrhizobium
- species: Bradyrhizobium diazoefficiens
- full scientific name: Bradyrhizobium diazoefficiens Delamuta et al. 2013
@ref: 30992
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Hyphomicrobiales
family: Bradyrhizobiaceae
genus: Bradyrhizobium
species: Bradyrhizobium diazoefficiens
strain designation: 3I1B110, R-12974
type strain: yes
Morphology
cell morphology
- @ref: 30992
- gram stain: negative
- cell length: 1.35 µm
- cell width: 1.35 µm
- cell shape: rod-shaped
pigmentation
- @ref: 30992
- production: yes
Culture and growth conditions
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 30992 | positive | optimum | 28 | mesophilic |
| 67770 | positive | growth | 30 | mesophilic |
culture pH
- @ref: 30992
- ability: positive
- type: optimum
- pH: 6.8
Physiology and metabolism
oxygen tolerance
- @ref: 30992
- oxygen tolerance: aerobe
observation
- @ref: 30992
- observation: aggregates in clumps
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 30992 | 22599 | arabinose | + | carbon source |
| 30992 | 18403 | L-arabitol | + | carbon source |
| 30992 | 22653 | asparagine | + | carbon source |
| 30992 | 16947 | citrate | + | carbon source |
| 30992 | 28757 | fructose | + | carbon source |
| 30992 | 33984 | fucose | + | carbon source |
| 30992 | 29987 | glutamate | + | carbon source |
| 30992 | 17754 | glycerol | + | carbon source |
| 30992 | 25017 | leucine | + | carbon source |
| 30992 | 29864 | mannitol | + | carbon source |
| 30992 | 37684 | mannose | + | carbon source |
| 30992 | 28044 | phenylalanine | + | carbon source |
| 30992 | 26271 | proline | + | carbon source |
| 30992 | 26546 | rhamnose | + | carbon source |
| 30992 | 33942 | ribose | + | carbon source |
| 30992 | 30911 | sorbitol | + | carbon source |
| 30992 | 26986 | threonine | + | carbon source |
| 30992 | 16296 | D-tryptophan | + | carbon source |
| 30992 | 18222 | xylose | + | carbon source |
enzymes
- @ref: 30992
- value: alkaline phosphatase
- activity: +
- ec: 3.1.3.1
Isolation, sampling and environmental information
isolation
| @ref | sample type | host species | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|---|
| 30992 | plant associated | |||||
| 67770 | Root nodules of Glycine max | Glycine max | FL | USA | USA | North America |
isolation source categories
- Cat1: #Host
- Cat2: #Plants
taxonmaps
- @ref: 69479
- File name: preview.99_445.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_86;96_297;97_329;98_370;99_445&stattab=map
- Last taxonomy: Bradyrhizobium
- 16S sequence: AF363150
- Sequence Identity:
- Total samples: 12887
- soil counts: 5001
- aquatic counts: 2827
- animal counts: 4320
- plant counts: 739
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 67770 | Bradyrhizobium diazoefficiens USDA 110 gene for 16S ribosomal RNA, partial sequence | AB909430 | 1313 | ena | 224911 |
| 67770 | Bradyrhizobium japonicum strain USDA 110 16S ribosomal RNA gene, partial sequence | AF363150 | 1321 | ena | 224911 |
| 67770 | Bradyrhizobium japonicum (strain USDA 110) gene for 16S ribosomal RNA | D13430 | 1457 | ena | 224911 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 67770 | Bradyrhizobium diazoefficiens USDA 110 USDA110 | GCA_000011365 | complete | ncbi | 224911 |
| 67770 | Bradyrhizobium diazoefficiens USDA 110 | GCA_001642675 | complete | ncbi | 224911 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 30992 | 63.98 | |
| 67770 | 64.1 | genome sequence analysis |
External links
@ref: 30992
culture collection no.: IAM 13628, CCRC 13528, NRRL B-4361, NRRL B-4450, TAL 102, BCRC 13528, JCM 10833, TISTR 339, SEMIA 5032, ACCC 15034, CCT 4249, NBRC 14792, CNPSo 46, USDA 110
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 23504968 | Polyphasic evidence supporting the reclassification of Bradyrhizobium japonicum group Ia strains as Bradyrhizobium diazoefficiens sp. nov. | Delamuta JRM, Ribeiro RA, Ormeno-Orrillo E, Melo IS, Martinez-Romero E, Hungria M | Int J Syst Evol Microbiol | 10.1099/ijs.0.049130-0 | 2013 | Bacterial Typing Techniques, Bradyrhizobium/*classification/genetics, DNA, Bacterial/genetics, DNA, Ribosomal Spacer/genetics, Fabaceae/microbiology, Genes, Bacterial, Nitrogen Fixation, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Symbiosis | Transcriptome |
| 23594921 | Biotechnological potential of rhizobial metabolites to enhance the performance of Bradyrhizobium spp. and Azospirillum brasilense inoculants with soybean and maize. | Marks BB, Megias M, Nogueira MA, Hungria M | AMB Express | 10.1186/2191-0855-3-21 | 2013 | |||
| Genetics | 24888481 | Comparative genomics of Bradyrhizobium japonicum CPAC 15 and Bradyrhizobium diazoefficiens CPAC 7: elite model strains for understanding symbiotic performance with soybean. | Siqueira AF, Ormeno-Orrillo E, Souza RC, Rodrigues EP, Almeida LG, Barcellos FG, Batista JS, Nakatani AS, Martinez-Romero E, Vasconcelos AT, Hungria M | BMC Genomics | 10.1186/1471-2164-15-420 | 2014 | Bradyrhizobium/*classification/*genetics/physiology, Genome Size, *Genome, Bacterial, Genomics, Interspersed Repetitive Sequences, Molecular Sequence Data, Phylogeny, Recombination, Genetic, Soybeans/*microbiology/physiology, Symbiosis | Phylogeny |
| Enzymology | 25710371 | Preferential association of endophytic bradyrhizobia with different rice cultivars and its implications for rice endophyte evolution. | Piromyou P, Greetatorn T, Teamtisong K, Okubo T, Shinoda R, Nuntakij A, Tittabutr P, Boonkerd N, Minamisawa K, Teaumroong N | Appl Environ Microbiol | 10.1128/AEM.04253-14 | 2015 | Bradyrhizobiaceae/*growth & development/*isolation & purification/physiology, Endophytes/*growth & development/*isolation & purification/physiology, Fabaceae/microbiology, Oryza/*microbiology, Plant Development, Plant Root Nodulation, Symbiosis | Phylogeny |
| Metabolism | 26035130 | Stable Fluorescent and Enzymatic Tagging of Bradyrhizobium diazoefficiens to Analyze Host-Plant Infection and Colonization. | Ledermann R, Bartsch I, Remus-Emsermann MN, Vorholt JA, Fischer HM | Mol Plant Microbe Interact | 10.1094/MPMI-03-15-0054-TA | 2015 | Bacterial Proteins/genetics/*metabolism, Bradyrhizobium/*enzymology/genetics/metabolism, DNA, Recombinant, Gene Expression Regulation, Bacterial/*physiology, Gene Expression Regulation, Enzymologic/*physiology, Luminescent Proteins/genetics/*metabolism, Plant Roots/microbiology, Soybeans/*microbiology | Pathogenicity |
| Phylogeny | 26686616 | The tight-adhesion proteins TadGEF of Bradyrhizobium diazoefficiens USDA 110 are involved in cell adhesion and infectivity on soybean roots. | Mongiardini EJ, Parisi GD, Quelas JI, Lodeiro AR | Microbiol Res | 10.1016/j.micres.2015.10.001 | 2015 | Amino Acid Sequence, *Bacterial Adhesion, Bacterial Proteins/chemistry/genetics/*metabolism, Bradyrhizobium/chemistry/classification/genetics/*physiology, Molecular Sequence Data, Phylogeny, Plant Roots/*microbiology, Sequence Alignment, Soybeans/*microbiology | Genetics |
| Metabolism | 26911707 | Identification of the Hydrogen Uptake Gene Cluster for Chemolithoautotrophic Growth and Symbiosis Hydrogen Uptake in Bradyrhizobium Diazoefficiens. | Masuda S, Saito M, Sugawara C, Itakura M, Eda S, Minamisawa K | Microbes Environ | 10.1264/jsme2.ME15182 | 2016 | Bradyrhizobium/*genetics/growth & development/*metabolism/physiology, *Chemoautotrophic Growth, Gene Knockout Techniques, Genomic Islands, Hydrogen/*metabolism, *Multigene Family, Root Nodules, Plant/microbiology, Soybeans/microbiology, *Symbiosis | |
| Metabolism | 27118154 | Improvement in nitrogen fixation capacity could be part of the domestication process in soybean. | Munoz N, Qi X, Li MW, Xie M, Gao Y, Cheung MY, Wong FL, Lam HM | Heredity (Edinb) | 10.1038/hdy.2016.27 | 2016 | Bradyrhizobium/metabolism, Chromosome Mapping, *Domestication, Hydroxybutyrates/metabolism, Nitrogen/metabolism, *Nitrogen Fixation, Plant Breeding, Polyesters/metabolism, Polymorphism, Single Nucleotide, Quantitative Trait Loci, Root Nodules, Plant/microbiology, Sinorhizobium/metabolism, Soybeans/*genetics/microbiology, Symbiosis | |
| 27383683 | Growth Rate of and Gene Expression in Bradyrhizobium diazoefficiens USDA110 due to a Mutation in blr7984, a TetR Family Transcriptional Regulator Gene. | Ohkama-Ohtsu N, Honma H, Nakagome M, Nagata M, Yamaya-Ito H, Sano Y, Hiraoka N, Ikemi T, Suzuki A, Okazaki S, Minamisawa K, Yokoyama T | Microbes Environ | 10.1264/jsme2.ME16056 | 2016 | Biofilms/growth & development, Bradyrhizobium/*genetics/*growth & development/physiology, Gene Expression Profiling, *Gene Expression Regulation, Bacterial, Gene Knockout Techniques, *Genes, Regulator, *Mutation, Repressor Proteins/*genetics | ||
| Metabolism | 27633524 | Mitigation of soil N2O emission by inoculation with a mixed culture of indigenous Bradyrhizobium diazoefficiens. | Akiyama H, Hoshino YT, Itakura M, Shimomura Y, Wang Y, Yamamoto A, Tago K, Nakajima Y, Minamisawa K, Hayatsu M | Sci Rep | 10.1038/srep32869 | 2016 | *Biodegradation, Environmental, Bradyrhizobium/*metabolism, Ecosystem, Gene Expression Profiling, Gene Expression Regulation, Plant, Mutation, Nitrogen/analysis, Nitrogen Fixation, Nitrous Oxide/*analysis, Plant Roots/microbiology, Plant Shoots/microbiology, Soil/*chemistry, Soil Microbiology, Soybeans/microbiology | |
| Metabolism | 28244516 | Construction and simulation of the Bradyrhizobium diazoefficiens USDA110 metabolic network: a comparison between free-living and symbiotic states. | Yang Y, Hu XP, Ma BG | Mol Biosyst | 10.1039/c6mb00553e | 2017 | Bradyrhizobium/genetics/*metabolism, Computer Simulation, Energy Metabolism, Gene Expression Regulation, Bacterial, Genes, Essential, Genomics/methods, *Metabolic Networks and Pathways, *Models, Biological, Nitrogen/metabolism, Phenotype, Symbiosis | Phenotype |
| 28767122 | Bradyrhizobium elkanii nod regulon: insights through genomic analysis. | Passaglia LMP | Genet Mol Biol | 10.1590/1678-4685-GMB-2016-0228 | 2017 | |||
| Metabolism | 28831061 | Integrated roles of BclA and DD-carboxypeptidase 1 in Bradyrhizobium differentiation within NCR-producing and NCR-lacking root nodules. | Barriere Q, Guefrachi I, Gully D, Lamouche F, Pierre O, Fardoux J, Chaintreuil C, Alunni B, Timchenko T, Giraud E, Mergaert P | Sci Rep | 10.1038/s41598-017-08830-0 | 2017 | Bradyrhizobium/*genetics/metabolism, Carboxypeptidases/*genetics/metabolism, Membrane Glycoproteins/*genetics/metabolism, Peptides/*metabolism, Phenotype, Plant Proteins/*metabolism, Root Nodules, Plant/*metabolism/*microbiology, Symbiosis | Phenotype |
| 29173048 | Nonspecific Symbiosis Between Sophora flavescens and Different Rhizobia. | Liu YH, Jiao YS, Liu LX, Wang D, Tian CF, Wang ET, Wang L, Chen WX, Wu SY, Guo BL, Guan ZG, Poinsot V, Chen WF | Mol Plant Microbe Interact | 10.1094/MPMI-05-17-0117-R | 2017 | Mutation, Plant Root Nodulation/genetics/physiology, Rhizobiaceae/*physiology, Sophora/genetics/microbiology/*physiology, Symbiosis/*physiology | ||
| Genetics | 29192078 | Genome Sequence of Bacillus velezensis S141, a New Strain of Plant Growth-Promoting Rhizobacterium Isolated from Soybean Rhizosphere. | Sibponkrung S, Kondo T, Tanaka K, Tittabutr P, Boonkerd N, Teaumroong N, Yoshida KI | Genome Announc | 10.1128/genomeA.01312-17 | 2017 | Phylogeny | |
| Metabolism | 29281013 | Characterization of a novel MIIA domain-containing protein (MdcE) in Bradyrhizobium spp. | Duran D, Imperial J, Palacios J, Ruiz-Argueso T, Gottfert M, Zehner S, Rey L | FEMS Microbiol Lett | 10.1093/femsle/fnx276 | 2018 | Bacterial Proteins/*chemistry/genetics/*metabolism, Bradyrhizobium/classification/*genetics/*metabolism, Cations/metabolism, Escherichia coli/genetics, Fabaceae/microbiology, Mutation, Phylogeny, *Plant Root Nodulation, Promoter Regions, Genetic, Protein Domains/genetics, Recombinant Fusion Proteins/chemistry/genetics/metabolism, Type III Secretion Systems/genetics | Phylogeny |
| Stress | 29782030 | The genomes of three Bradyrhizobium sp. isolated from root nodules of Lupinus albescens grown in extremely poor soils display important genes for resistance to environmental stress. | Granada CE, Vargas LK, Sant'Anna FH, Balsanelli E, Baura VA, Oliveira Pedrosa F, Souza EM, Falcon T, Passaglia LMP | Genet Mol Biol | 10.1590/1678-4685-GMB-2017-0098 | 2018 | ||
| Enzymology | 30031478 | Symbiotic characteristics of Bradyrhizobium diazoefficiens USDA 110 mutants associated with shrubby sophora (Sophora flavescens) and soybean (Glycine max). | Liu YH, Wang ET, Jiao YS, Tian CF, Wang L, Wang ZJ, Guan JJ, Singh RP, Chen WX, Chen WF | Microbiol Res | 10.1016/j.micres.2018.05.012 | 2018 | Bradyrhizobium/genetics/*isolation & purification/*physiology, DNA Transposable Elements, Gene Deletion, Host Specificity, Mutagenesis, Insertional, Plant Root Nodulation, Sophora/*microbiology, Soybeans/*microbiology, *Symbiosis | Phylogeny |
| Metabolism | 30054359 | An Amidase Gene, ipaH, Is Responsible for the Initial Step in the Iprodione Degradation Pathway of Paenarthrobacter sp. Strain YJN-5. | Yang Z, Jiang W, Wang X, Cheng T, Zhang D, Wang H, Qiu J, Cao L, Wang X, Hong Q | Appl Environ Microbiol | 10.1128/AEM.01150-18 | 2018 | Amidohydrolases/chemistry/genetics/*metabolism, Aminoimidazole Carboxamide/*analogs & derivatives/metabolism, Bacterial Proteins/chemistry/genetics/*metabolism, Biodegradation, Environmental, Fungicides, Industrial/*metabolism, Hydantoins/*metabolism, Kinetics, Metabolic Networks and Pathways, Micrococcaceae/chemistry/*enzymology/genetics | Enzymology |
| Metabolism | 30091610 | Bradyrhizobium diazoefficiens USDA 110- Glycine max Interactome Provides Candidate Proteins Associated with Symbiosis. | Zhang L, Liu JY, Gu H, Du Y, Zuo JF, Zhang Z, Zhang M, Li P, Dunwell JM, Cao Y, Zhang Z, Zhang YM | J Proteome Res | 10.1021/acs.jproteome.8b00209 | 2018 | 14-3-3 Proteins/genetics/metabolism, Bacterial Proteins/classification/genetics/*metabolism, Bradyrhizobium/genetics/*metabolism, Computational Biology/*methods, Dicarboxylic Acid Transporters/genetics/metabolism, Gene Expression, Gene Ontology, Heat-Shock Proteins/genetics/metabolism, Ion Channels/genetics/metabolism, Molecular Sequence Annotation, Nitrogen Fixation/physiology, Plant Proteins/classification/genetics/*metabolism, Protein Binding, Protein Interaction Mapping, *Protein Interaction Maps, Root Nodules, Plant/genetics/metabolism/microbiology, SNARE Proteins/genetics/metabolism, Soybeans/genetics/*metabolism/microbiology, Symbiosis/physiology | Phylogeny |
| Metabolism | 30355296 | Bradyrhizobium diazoefficiens USDA110 PhaR functions for pleiotropic regulation of cellular processes besides PHB accumulation. | Nishihata S, Kondo T, Tanaka K, Ishikawa S, Takenaka S, Kang CM, Yoshida KI | BMC Microbiol | 10.1186/s12866-018-1317-2 | 2018 | Bacterial Proteins/*genetics, Binding Sites, Bradyrhizobium/*genetics/*metabolism, Carbon/metabolism, DNA-Binding Proteins/metabolism, *Gene Expression Regulation, Bacterial, Hydroxybutyrates/*metabolism, Polyesters/*metabolism, Promoter Regions, Genetic, Repressor Proteins/metabolism, Transcription Factors/genetics, Transcriptome | Transcriptome |
| 30726789 | Evaluation of Immune Responses Induced by Simultaneous Inoculations of Soybean (Glycine max [L.] Merr.) with Soil Bacteria and Rhizobia. | Hashami SZ, Nakamura H, Ohkama-Ohtsu N, Kojima K, Djedidi S, Fukuhara I, Haidari MD, Sekimoto H, Yokoyama T | Microbes Environ | 10.1264/jsme2.ME18110 | 2019 | *Bacterial Physiological Phenomena, Bradyrhizobium/*physiology, *Gene Expression Regulation, Plant, Mutation, Nitrogen Fixation, Plant Proteins/*genetics, Plant Root Nodulation/genetics/*immunology, Root Nodules, Plant/immunology/microbiology, Soil Microbiology, Soybeans/*immunology/microbiology, Symbiosis | ||
| 30781830 | Phylogenomic Analyses of Bradyrhizobium Reveal Uneven Distribution of the Lateral and Subpolar Flagellar Systems, Which Extends to Rhizobiales. | Garrido-Sanz D, Redondo-Nieto M, Mongiardini E, Blanco-Romero E, Duran D, Quelas JI, Martin M, Rivilla R, Lodeiro AR, Althabegoiti MJ | Microorganisms | 10.3390/microorganisms7020050 | 2019 | |||
| Metabolism | 30803109 | Analysis of the denitrification pathway and greenhouse gases emissions in Bradyrhizobium sp. strains used as biofertilizers in South America. | Obando M, Correa-Galeote D, Castellano-Hinojosa A, Gualpa J, Hidalgo A, Alche JD, Bedmar E, Cassan F | J Appl Microbiol | 10.1111/jam.14233 | 2019 | Agriculture/methods, Bradyrhizobium/genetics/*metabolism, *Denitrification, Environmental Pollution/analysis/prevention & control, Greenhouse Gases/*analysis/metabolism, Metabolic Networks and Pathways, Nitrous Oxide/analysis/metabolism, South America, Soybeans/metabolism/microbiology, Symbiosis | |
| Metabolism | 30832430 | Classical Soybean (Glycine max (L.) Merr) Symbionts, Sinorhizobium fredii USDA191 and Bradyrhizobium diazoefficiens USDA110, Reveal Contrasting Symbiotic Phenotype on Pigeon Pea (Cajanus cajan (L.) Millsp). | Alaswad AA, Oehrle NW, Krishnan HB | Int J Mol Sci | 10.3390/ijms20051091 | 2019 | Bradyrhizobium/genetics/metabolism/*pathogenicity, Cajanus/metabolism/*microbiology, Host Specificity, Nitrogen Fixation, *Phenotype, Root Nodules, Plant/metabolism/microbiology/ultrastructure, Sinorhizobium fredii/genetics/metabolism/*pathogenicity, Soybeans/microbiology, *Symbiosis, Type III Secretion Systems/genetics | Phenotype |
| Metabolism | 30860585 | Brazilian-adapted soybean Bradyrhizobium strains uncover IS elements with potential impact on biological nitrogen fixation. | Barros-Carvalho GA, Hungria M, Lopes FM, Van Sluys MA | FEMS Microbiol Lett | 10.1093/femsle/fnz046 | 2019 | Bradyrhizobium/*genetics/*metabolism, Computational Biology, DNA Transposable Elements/*genetics, Genomic Islands/genetics, Nitrogen Fixation/genetics/physiology, Soybeans/*microbiology | |
| 31134003 | An Integrated Systems Approach Unveils New Aspects of Microoxia-Mediated Regulation in Bradyrhizobium diazoefficiens. | Fernandez N, Cabrera JJ, Varadarajan AR, Lutz S, Ledermann R, Roschitzki B, Eberl L, Bedmar EJ, Fischer HM, Pessi G, Ahrens CH, Mesa S | Front Microbiol | 10.3389/fmicb.2019.00924 | 2019 | |||
| Metabolism | 31209034 | Molecular basis for enantioselective herbicide degradation imparted by aryloxyalkanoate dioxygenases in transgenic plants. | Chekan JR, Ongpipattanakul C, Wright TR, Zhang B, Bollinger JM Jr, Rajakovich LJ, Krebs C, Cicchillo RM, Nair SK | Proc Natl Acad Sci U S A | 10.1073/pnas.1900711116 | 2019 | 2,4-Dichlorophenoxyacetic Acid/metabolism, Dioxygenases/chemistry/*metabolism, *Herbicide Resistance, Herbicides/chemistry/*metabolism, Indoleacetic Acids/metabolism, Plant Proteins/chemistry/*metabolism, Plants, Genetically Modified/enzymology/metabolism, Protein Structure, Tertiary, Soybeans, Stereoisomerism, Structure-Activity Relationship, Zea mays | Enzymology |
| 31418203 | [Biological characteristics of bacteriophages infecting three typic rhizobia of legume]. | Liu JJ, Liu ZX, Yu H, Yao Q, Yu ZH, Wang GH | Ying Yong Sheng Tai Xue Bao | 10.13287/j.1001-9332.201908.029 | 2019 | *Bacteriophages, *Bradyrhizobium, Fabaceae/*microbiology/virology, Nitrogen Fixation, Rhizobium/*virology | ||
| Enzymology | 31421721 | Lanthanide-dependent methanol dehydrogenase from the legume symbiotic nitrogen-fixing bacterium Bradyrhizobium diazoefficiens strain USDA110. | Wang L, Suganuma S, Hibino A, Mitsui R, Tani A, Matsumoto T, Ebihara A, Fitriyanto NA, Pertiwiningrum A, Shimada M, Hayakawa T, Nakagawa T | Enzyme Microb Technol | 10.1016/j.enzmictec.2019.109371 | 2019 | Alcohol Oxidoreductases/*biosynthesis, Bradyrhizobium/*enzymology, Fabaceae/microbiology, Lanthanoid Series Elements/*chemistry, Oxidation-Reduction, Symbiosis | |
| Metabolism | 31562172 | An Alkane Sulfonate Monooxygenase Is Required for Symbiotic Nitrogen Fixation by Bradyrhizobium diazoefficiens (syn. Bradyrhizobium japonicum) USDA110(T). | Speck JJ, James EK, Sugawara M, Sadowsky MJ, Gyaneshwar P | Appl Environ Microbiol | 10.1128/AEM.01552-19 | 2019 | Alkanesulfonates/*metabolism, Bacterial Proteins/genetics/metabolism, Bradyrhizobium/*enzymology/genetics/*metabolism, Fabaceae/microbiology, Mixed Function Oxygenases/genetics/*metabolism, Nitrogen Fixation/*physiology, Plant Root Nodulation, Rhizobium/metabolism, Root Nodules, Plant/cytology/microbiology, Soybeans/microbiology, Symbiosis/*physiology, Vigna/microbiology | Enzymology |
| Metabolism | 31623782 | Divergent metabolic adjustments in nodules are indispensable for efficient N2 fixation of soybean under phosphate stress. | Sulieman S, Kusano M, Ha CV, Watanabe Y, Abdalla MA, Abdelrahman M, Kobayashi M, Saito K, Muhling KH, Tran LP | Plant Sci | 10.1016/j.plantsci.2019.110249 | 2019 | Bradyrhizobium/*physiology, *Nitrogen Fixation, Phosphates/*deficiency, Root Nodules, Plant/*metabolism/microbiology, Soybeans/*metabolism/microbiology, *Symbiosis | Stress |
| Phylogeny | 31860058 | Novel rhizobia exhibit superior nodulation and biological nitrogen fixation even under high nitrate concentrations. | Nguyen HP, Miwa H, Obirih-Opareh J, Suzaki T, Yasuda M, Okazaki S | FEMS Microbiol Ecol | 10.1093/femsec/fiz184 | 2020 | Bradyrhizobium/classification/physiology, Nitrates/*metabolism, *Nitrogen Fixation/genetics, Phylogeny, Plant Roots/microbiology, Rhizobium/genetics/*metabolism, Root Nodules, Plant/microbiology, Soil, Soil Microbiology, Soybeans/microbiology, Symbiosis | Metabolism |
| 32215759 | Mycorrhizal networks facilitate the colonization of legume roots by a symbiotic nitrogen-fixing bacterium. | de Novais CB, Sbrana C, da Conceicao Jesus E, Rouws LFM, Giovannetti M, Avio L, Siqueira JO, Saggin Junior OJ, da Silva EMR, de Faria SM | Mycorrhiza | 10.1007/s00572-020-00948-w | 2020 | Bacteria, *Fabaceae, *Mycorrhizae, Nitrogen, Plant Roots, Symbiosis | ||
| 32392716 | Co-Inoculation of Bacillus velezensis Strain S141 and Bradyrhizobium Strains Promotes Nodule Growth and Nitrogen Fixation. | Sibponkrung S, Kondo T, Tanaka K, Tittabutr P, Boonkerd N, Yoshida KI, Teaumroong N | Microorganisms | 10.3390/microorganisms8050678 | 2020 | |||
| 32408049 | Dual-luciferase assay and siRNA silencing for nodD1 to study the competitiveness of Bradyrhizobium diazoefficiens USDA110 in soybean nodulation. | Ramongolalaina C | Microbiol Res | 10.1016/j.micres.2020.126488 | 2020 | Bacterial Proteins/*genetics, Bradyrhizobium/*genetics, CRISPR-Cas Systems, Fluorescent Dyes/analysis, Genes, Bacterial, Luciferases, Renilla, Nitrogen Fixation/genetics, Plant Development, *Plant Root Nodulation, Plant Roots/microbiology, RNA, Small Interfering, Soil Microbiology, Soybeans/*microbiology, Symbiosis, Transformation, Bacterial | ||
| Metabolism | 32924759 | Involvement of a Novel TetR-Like Regulator (BdtR) of Bradyrhizobium diazoefficiens in the Efflux of Isoflavonoid Genistein. | Han F, He X, Chen W, Gai H, Bai X, He Y, Takeshima K, Ohwada T, Wei M, Xie F | Mol Plant Microbe Interact | 10.1094/MPMI-08-20-0243-R | 2020 | Bacterial Proteins/genetics/metabolism, *Bradyrhizobium/drug effects/genetics/metabolism, Gene Expression Regulation, Bacterial, *Genistein/pharmacology, *Soybeans/metabolism/microbiology, Symbiosis | Pathogenicity |
| Pathogenicity | 33329441 | Whole-Genome Sequencing of Bradyrhizobium diazoefficiens 113-2 and Comparative Genomic Analysis Provide Molecular Insights Into Species Specificity and Host Specificity. | Li R, Feng Y, Chen H, Zhang C, Huang Y, Chen L, Hao Q, Cao D, Yuan S, Zhou X | Front Microbiol | 10.3389/fmicb.2020.576800 | 2020 | ||
| 33331105 | Site-directed mutagenesis of Bradyrhizobium diazoefficiens USDA 110 aroA improves bacterial growth and competitiveness for soybean nodulation in the presence of glyphosate. | Quelas JI, Lastra RA, Lorenze C, Escobar M, Lepek VC | Environ Microbiol Rep | 10.1111/1758-2229.12917 | 2020 | Bradyrhizobium, Glycine/analogs & derivatives, Mutagenesis, Site-Directed, *Soybeans/microbiology, United States, United States Department of Agriculture | ||
| 33584615 | Root Nodule Rhizobia From Undomesticated Shrubs of the Dry Woodlands of Southern Africa Can Nodulate Angolan Teak Pterocarpus angolensis, an Important Source of Timber. | Bunger W, Sarkar A, Gronemeyer JL, Zielinski J, Revermann R, Hurek T, Reinhold-Hurek B | Front Microbiol | 10.3389/fmicb.2021.611704 | 2021 | |||
| 33975972 | Bradyrhizobium diazoefficiens USDA110 Nodulation of Aeschynomene afraspera Is Associated with Atypical Terminal Bacteroid Differentiation and Suboptimal Symbiotic Efficiency. | Nicoud Q, Lamouche F, Chaumeret A, Balliau T, Le Bars R, Bourge M, Pierre F, Guerard F, Sallet E, Tuffigo S, Pierre O, Dessaux Y, Gilard F, Gakiere B, Nagy I, Kereszt A, Zivy M, Mergaert P, Gourion B, Alunni B | mSystems | 10.1128/mSystems.01237-20 | 2021 | |||
| Metabolism | 34088185 | The inhibitory mechanism of natural soil colloids on the biodegradation of polychlorinated biphenyls by a degrading bacterium. | Li R, Ren W, Teng Y, Sun Y, Xu Y, Zhao L, Wang X, Christie P, Luo Y | J Hazard Mater | 10.1016/j.jhazmat.2021.125687 | 2021 | Bacteria, Biodegradation, Environmental, Bradyrhizobium, Colloids, *Polychlorinated Biphenyls/toxicity, Soil, *Soil Pollutants/analysis | |
| Phylogeny | 34106824 | Bradyrhizobium septentrionale sp. nov. (sv. septentrionale) and Bradyrhizobium quebecense sp. nov. (sv. septentrionale) associated with legumes native to Canada possess rearranged symbiosis genes and numerous insertion sequences. | Bromfield ESP, Cloutier S | Int J Syst Evol Microbiol | 10.1099/ijsem.0.004831 | 2021 | Base Composition, Base Sequence, Bayes Theorem, Bradyrhizobium/classification/*genetics/*physiology, Canada, Fabaceae/*microbiology, *Gene Rearrangement, Mutagenesis, Insertional/*genetics, Phenotype, Phylogeny, Plant Root Nodulation/genetics, RNA, Ribosomal, 16S/genetics, Ribosome Subunits/genetics, Root Nodules, Plant/microbiology, Symbiosis/*genetics | Phenotype |
| Transcriptome | 34168197 | Transposon sequencing analysis of Bradyrhizobium diazoefficiens 110spc4. | Baraquet C, Dai W, Mendiola J, Pechter K, Harwood CS | Sci Rep | 10.1038/s41598-021-92534-z | 2021 | Bacterial Proteins/genetics, Bradyrhizobium/*genetics, DNA Transposable Elements/*genetics, Nitrogen Fixation/genetics, Rhodopseudomonas/genetics | |
| Stress | 34349815 | Enhancing the Efficiency of Soybean Inoculant for Nodulation under Multi-Environmental Stress Conditions. | Wongdee J, Yuttavanichakul W, Longthonglang A, Teamtisong K, Boonkerd N, Teaumroong N, Tittabutr P | Pol J Microbiol | 10.33073/pjm-2021-024 | 2021 | Bradyrhizobium/*physiology, *Environment, Root Nodules, Plant/*microbiology, Soybeans/*microbiology, Stress, Physiological | |
| Transcriptome | 34400661 | The Bradyrhizobium diazoefficiens type III effector NopE modulates the regulation of plant hormones towards nodulation in Vigna radiata. | Piromyou P, Nguyen HP, Songwattana P, Boonchuen P, Teamtisong K, Tittabutr P, Boonkerd N, Alisha Tantasawat P, Gottfert M, Okazaki S, Teaumroong N | Sci Rep | 10.1038/s41598-021-95925-4 | 2021 | Base Sequence, Bradyrhizobium/genetics/*physiology, Evolution, Molecular, Gene Expression Regulation, Bacterial, Gene Expression Regulation, Plant, Genes, Bacterial, Mutation, Plant Growth Regulators/*physiology, Plant Proteins/biosynthesis/genetics/*physiology, Plant Root Nodulation/*physiology, Plant Roots/microbiology, RNA, Bacterial/biosynthesis/genetics, RNA, Plant/biosynthesis/genetics, Root Nodules, Plant/*microbiology, Salicylic Acid/metabolism, Symbiosis, Transcriptome, Vigna/*microbiology | Metabolism |
| Genetics | 34762518 | Comparative Analysis of Three Bradyrhizobium diazoefficiens Genomes Show Specific Mutations Acquired during Selection for a Higher Motility Phenotype and Adaption to Laboratory Conditions. | Lozano MJ, Redondo-Nieto M, Garrido-Sanz D, Mongiardini E, Quelas JI, Mengucci F, Dardis C, Lodeiro A, Althabegoiti MJ | Microbiol Spectr | 10.1128/Spectrum.00569-21 | 2021 | Adaptation, Biological, Bradyrhizobium/cytology/*genetics/physiology, *Genome, Bacterial, Genomics, Mutation, Phylogeny, Polymorphism, Single Nucleotide, Symbiosis | Phylogeny |
| Metabolism | 34769335 | Computationally Reconstructed Interactome of Bradyrhizobium diazoefficiens USDA110 Reveals Novel Functional Modules and Protein Hubs for Symbiotic Nitrogen Fixation. | Ma JX, Yang Y, Li G, Ma BG | Int J Mol Sci | 10.3390/ijms222111907 | 2021 | Bacterial Proteins/genetics/*metabolism, Bradyrhizobium/genetics/growth & development/*metabolism, Nitrogen/*metabolism, *Nitrogen Fixation, *Protein Interaction Maps, Proteome, Rhizobium/*physiology, Root Nodules, Plant/genetics/*metabolism, Soybeans/microbiology, Symbiosis, Transcriptome | Proteome |
| Stress | 34782938 | Whole-Genome Resequencing of Spontaneous Oxidative Stress-Resistant Mutants Reveals an Antioxidant System of Bradyrhizobium japonicum Involved in Soybean Colonization. | Liebrenz K, Gomez C, Brambilla S, Frare R, Stritzler M, Maguire V, Ruiz O, Soldini D, Pascuan C, Soto G, Ayub N | Microb Ecol | 10.1007/s00248-021-01925-2 | 2021 | ||
| 34925249 | Rhizobium Symbiotic Capacity Shapes Root-Associated Microbiomes in Soybean. | Liu Y, Ma B, Chen W, Schlaeppi K, Erb M, Stirling E, Hu L, Wang E, Zhang Y, Zhao K, Lu Z, Ye S, Xu J | Front Microbiol | 10.3389/fmicb.2021.709012 | 2021 | |||
| 34946092 | Identification of an Exopolysaccharide Biosynthesis Gene in Bradyrhizobium diazoefficiens USDA110. | Xu C, Ruan H, Cai W, Staehelin C, Dai W | Microorganisms | 10.3390/microorganisms9122490 | 2021 | |||
| Transcriptome | 36276463 | Identification of sigma factor 54-regulated small non-coding RNAs by employing genome-wide and transcriptome-based methods in rhizobium strains. | Rajendran K, Kumar V, Raja I, Kumariah M, Tennyson J | 3 Biotech | 10.1007/s13205-022-03394-x | 2022 | ||
| 36422352 | Genetic and Physiological Characterization of Soybean-Nodule-Derived Isolates from Bangladeshi Soils Revealed Diverse Array of Bacteria with Potential Bradyrhizobia for Biofertilizers. | Mortuza MF, Djedidi S, Ito T, Agake SI, Sekimoto H, Yokoyama T, Okazaki S, Ohkama-Ohtsu N | Microorganisms | 10.3390/microorganisms10112282 | 2022 |
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