Strain identifier
BacDive ID: 133979
Type strain: 
Species: Myroides aquimaris
Strain Designation: SW105
Strain history: L. Song SW105.
NCBI tax ID(s): 1159016 (species)
version 8.1 (current version)
General
@ref: 30989
BacDive-ID: 133979
keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped
description: Myroides aquimaris SW105 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from seawater.
NCBI tax id
- NCBI tax id: 1159016
- Matching level: species
strain history
- @ref: 67770
- history: L. Song SW105.
doi: 10.13145/bacdive133979.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Flavobacteriia
- order: Flavobacteriales
- family: Flavobacteriaceae
- genus: Myroides
- species: Myroides aquimaris
- full scientific name: Myroides aquimaris García-López et al. 2020
synonyms
@ref synonym 20215 Flavobacterium marinum 20215 Paenimyroides aquimaris
@ref: 30989
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Flavobacteriaceae
genus: Flavobacterium
species: Flavobacterium marinum
strain designation: SW105
type strain: yes
Morphology
cell morphology
| @ref | gram stain | cell length | cell width | cell shape | motility | confidence |
|---|---|---|---|---|---|---|
| 30989 | negative | 2.75 µm | 0.4 µm | rod-shaped | no | |
| 69480 | negative | 99.998 |
pigmentation
- @ref: 30989
- production: yes
Culture and growth conditions
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 30989 | positive | growth | 15-45 | |
| 30989 | positive | optimum | 35 | mesophilic |
| 67770 | positive | growth | 35 | mesophilic |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 30989 | positive | growth | 5.5-8.5 | alkaliphile |
| 30989 | positive | optimum | 7.25 |
Physiology and metabolism
oxygen tolerance
- @ref: 30989
- oxygen tolerance: aerobe
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 30989 | no | |
| 69481 | no | 100 |
| 69480 | no | 99.993 |
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 30989 | NaCl | positive | growth | 0-5 % |
| 30989 | NaCl | positive | optimum | 1.25 % |
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 30989 | 16449 | alanine | + | carbon source |
| 30989 | 22599 | arabinose | + | carbon source |
| 30989 | 35391 | aspartate | + | carbon source |
| 30989 | 17057 | cellobiose | + | carbon source |
| 30989 | 29987 | glutamate | + | carbon source |
| 30989 | 28087 | glycogen | + | carbon source |
| 30989 | 24996 | lactate | + | carbon source |
| 30989 | 17716 | lactose | + | carbon source |
| 30989 | 17306 | maltose | + | carbon source |
| 30989 | 29864 | mannitol | + | carbon source |
| 30989 | 37684 | mannose | + | carbon source |
| 30989 | 506227 | N-acetylglucosamine | + | carbon source |
| 30989 | 26271 | proline | + | carbon source |
| 30989 | 17822 | serine | + | carbon source |
| 30989 | 30911 | sorbitol | + | carbon source |
| 30989 | 27082 | trehalose | + | carbon source |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 30989 | acid phosphatase | + | 3.1.3.2 |
| 30989 | alkaline phosphatase | + | 3.1.3.1 |
| 30989 | catalase | + | 1.11.1.6 |
| 30989 | cytochrome oxidase | + | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
- @ref: 30989
- sample type: seawater
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
- Cat3: #Marine
taxonmaps
- @ref: 69479
- File name: preview.99_152534.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_195;96_30851;97_39023;98_50748;99_152534&stattab=map
- Last taxonomy: Flavobacterium marinum subclade
- 16S sequence: JN867054
- Sequence Identity:
- Total samples: 308
- soil counts: 111
- aquatic counts: 80
- animal counts: 103
- plant counts: 14
Sequence information
16S sequences
- @ref: 30989
- description: Flavobacterium marinum strain SW105 16S ribosomal RNA gene, partial sequence
- accession: JN867054
- length: 1508
- database: nuccore
- NCBI tax ID: 1159016
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Flavobacterium marinum strain CGMCC 1.10825 | 1159016.3 | wgs | patric | 1159016 |
| 66792 | Flavobacterium marinum CGMCC 1.10825 | 2596583585 | draft | img | 1159016 |
| 67770 | Paenimyroides aquimaris CGMCC 1.10825 | GCA_900108395 | scaffold | ncbi | 1159016 |
GC content
- @ref: 30989
- GC-content: 36.2
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | no | 91.625 | yes |
| gram-positive | no | 98.3 | yes |
| anaerobic | no | 99.21 | yes |
| aerobic | yes | 87.649 | yes |
| halophile | no | 92.076 | yes |
| spore-forming | no | 95.778 | yes |
| flagellated | no | 96.009 | yes |
| thermophile | no | 98.922 | yes |
| glucose-util | yes | 77.586 | no |
| glucose-ferment | no | 93.516 | no |
External links
@ref: 30989
culture collection no.: CGMCC 1.10825, JCM 18132
Reference
| @id | authors | title | doi/url | ID_cross_reference | pubmed | journal |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 30989 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 27319 | 28776041 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | 33211880 | Nucleic Acids Res. 49: D498-D508 2020 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |