Strain identifier
BacDive ID: 133972
Type strain: 
Species: Flavobacterium yanchengense
Strain Designation: hg
NCBI tax ID(s): 1241321 (species)
version 8.1 (current version)
General
@ref: 30978
BacDive-ID: 133972
keywords: 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped
description: Flavobacterium yanchengense hg is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 1241321
- Matching level: species
doi: 10.13145/bacdive133972.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Flavobacteriia
- order: Flavobacteriales
- family: Flavobacteriaceae
- genus: Flavobacterium
- species: Flavobacterium yanchengense
- full scientific name: Flavobacterium yanchengense Hu et al. 2013
@ref: 30978
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Flavobacteriaceae
genus: Flavobacterium
species: Flavobacterium yanchengense
strain designation: hg
type strain: yes
Morphology
cell morphology
- @ref: 30978
- gram stain: negative
- cell length: 1.6 µm
- cell width: 0.5 µm
- cell shape: rod-shaped
- motility: no
pigmentation
- @ref: 30978
- production: yes
Culture and growth conditions
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 30978 | positive | growth | 15-37 | |
| 30978 | positive | optimum | 30 | mesophilic |
culture pH
| @ref | ability | type | pH |
|---|---|---|---|
| 30978 | positive | growth | 5.0-8.0 |
| 30978 | positive | optimum | 7 |
Physiology and metabolism
oxygen tolerance
- @ref: 30978
- oxygen tolerance: aerobe
spore formation
- @ref: 30978
- spore formation: no
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 30978 | NaCl | positive | growth | 0-3 % |
| 30978 | NaCl | positive | optimum | 1 % |
observation
- @ref: 30978
- observation: aggregates in clumps
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 30978 | acid phosphatase | + | 3.1.3.2 |
| 30978 | alkaline phosphatase | + | 3.1.3.1 |
| 30978 | catalase | + | 1.11.1.6 |
| 30978 | cytochrome oxidase | + | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
- @ref: 30978
- sample type: soil
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
Sequence information
16S sequences
- @ref: 30978
- description: Flavobacterium yanchengense strain hg 16S ribosomal RNA gene, partial sequence
- accession: JX548325
- length: 1477
- database: nuccore
- NCBI tax ID: 1241321
GC content
- @ref: 30978
- GC-content: 34
External links
@ref: 30978
culture collection no.: CCTCC AB 2012099, KACC 16855
literature
- topic: Phylogeny
- Pubmed-ID: 23315414
- title: Flavobacterium yanchengense sp. nov., isolated from soil.
- authors: Hu G, Zhang J, Yang G, Li YY, Guan YT, Wang J, Li SP, Hong Q
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.048801-0
- year: 2013
- mesh: Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/analysis, Flavobacterium/*classification/genetics/isolation & purification, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, *Soil Microbiology, Vitamin K 2/analogs & derivatives/analysis
- topic2: Genetics
Reference
| @id | authors | title | doi/url | ID_cross_reference | pubmed |
|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
| 30978 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 27308 | 28776041 |