Strain identifier

BacDive ID: 133962

Type strain: Yes

Species: Actinotalea ferrariae

Strain Designation: CF5-4

Strain history: <- Y Li, Huazhong Agri. Univ., China

NCBI tax ID(s): 1386098 (species)

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General

@ref: 67613

BacDive-ID: 133962

DSM-Number: 112671

keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-positive, rod-shaped

description: Actinotalea ferrariae CF5-4 is an aerobe, Gram-positive, rod-shaped bacterium that was isolated from iron mine.

NCBI tax id

  • NCBI tax id: 1386098
  • Matching level: species

strain history

@refhistory
67613<- KCTC; KCTC 29134 <- Y. Li, Huazhong Agricultural Univ.; CF5-4
67770KCTC 29134 <-- G. Wang; Huazhong Agric. Univ., China; CF5-4.
67771<- Y Li, Huazhong Agri. Univ., China

doi: 10.13145/bacdive133962.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micrococcales
  • family: Cellulomonadaceae
  • genus: Actinotalea
  • species: Actinotalea ferrariae
  • full scientific name: Actinotalea ferrariae Li et al. 2013

@ref: 67613

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Micrococcales

family: Cellulomonadaceae

genus: Actinotalea

species: Actinotalea ferrariae

full scientific name: Actinotalea ferrariae Li et al. 2013

strain designation: CF5-4

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
30960positive1.15 µm0.45 µmrod-shapedno
67771negative

pigmentation

  • @ref: 30960
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 67613
  • name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/92
  • composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
30960positivegrowth04-40
30960positiveoptimum28mesophilic
67613positivegrowth28mesophilic
67770positivegrowth28mesophilic
67771positivegrowth28mesophilic

culture pH

@refabilitytypepH
30960positivegrowth6.0-8.0
30960positiveoptimum7

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
30960aerobe
67771aerobe

halophily

@refsaltgrowthtested relationconcentration
30960NaClpositivegrowth0-7 %
30960NaClpositiveoptimum3 %

observation

@refobservation
30960aggregates in clumps
67770quinones: MK-10(H4)
67771quinones: MK-10

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3096030089acetate+carbon source
3096022599arabinose+carbon source
3096017234glucose+carbon source
3096028087glycogen+carbon source
3096017306maltose+carbon source
3096033942ribose+carbon source
3096017814salicin+carbon source
3096017992sucrose+carbon source
3096018222xylose+carbon source
309604853esculin+hydrolysis
3096017632nitrate+reduction

enzymes

@refvalueactivityec
30960acid phosphatase+3.1.3.2
30960alkaline phosphatase+3.1.3.1
30960alpha-galactosidase+3.2.1.22
30960catalase+1.11.1.6
30960gelatinase+

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
30960iron mine
67613iron mining powderHubei ProvenceChinaCHNAsia
67770Iron mining powder of Hongshan Iron Mine of Daye CityHubei ProvinceChinaCHNAsia
67771From environmental sampleHubeiChinaCHNAsia

isolation source categories

  • Cat1: #Engineered
  • Cat2: #Other
  • Cat3: #Mine

taxonmaps

  • @ref: 69479
  • File name: preview.99_37494.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_2302;97_2990;98_3745;99_37494&stattab=map
  • Last taxonomy: Actinotalea ferrariae
  • 16S sequence: HQ730135
  • Sequence Identity:
  • Total samples: 398
  • soil counts: 138
  • aquatic counts: 55
  • animal counts: 192
  • plant counts: 13

Safety information

risk assessment

  • @ref: 67613
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 30960
  • description: Actinotalea ferrariae CF5-4 16S ribosomal RNA gene, partial sequence
  • accession: HQ730135
  • length: 1483
  • database: nuccore
  • NCBI tax ID: 948458

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Actinotalea ferrariae CF5-4948458.3wgspatric948458
66792Actinotalea ferrariae CF5-42588254172draftimg948458
67770Actinotalea ferrariae CF5-4GCA_000603945contigncbi948458

GC content

@refGC-contentmethod
3096074.7
6777074.7high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno73.155no
flagellatedno96.23yes
gram-positiveyes94.038no
anaerobicno98.455no
halophileno91.077no
spore-formingno88.512no
thermophileno95.695yes
glucose-utilyes86.172yes
aerobicyes84.929yes
glucose-fermentno77.295no

External links

@ref: 67613

culture collection no.: KCTC 29134, CCTCC AB 2012198, DSM 112671, JCM 31479

straininfo link

  • @ref: 91645
  • straininfo: 400521

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny23524356Actinotalea ferrariae sp. nov., isolated from an iron mine, and emended description of the genus Actinotalea.Li Y, Chen F, Dong K, Wang GInt J Syst Evol Microbiol10.1099/ijs.0.048512-02013Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/analysis, *Iron, *Mining, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analysisGenetics
Phylogeny25307231Actinotalea suaedae sp. nov., isolated from the halophyte Suaeda physophora in Xinjiang, Northwest China.Zhao S, Li L, Li SH, Wang HF, Hozzein WN, Zhang YG, Wadaan MA, Li WJ, Tian CYAntonie Van Leeuwenhoek10.1007/s10482-014-0297-y2014Actinobacteria/*classification/genetics/*isolation & purification/physiology, Aerobiosis, Bacterial Typing Techniques, Base Composition, Carbohydrates/analysis, Cell Wall/chemistry, Chenopodiaceae/*microbiology, China, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Microscopy, Electron, Scanning, Microscopy, Electron, Transmission, Molecular Sequence Data, Peptidoglycan/analysis, Phospholipids/analysis, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Salt-Tolerant Plants/microbiology, Sequence Analysis, DNAGenetics
Phylogeny27902298Pseudactinotalea terrae gen. nov., sp. nov., isolated from greenhouse soil, and reclassification of Actinotalea suaedae as Pseudactinotalea suaedae comb. nov.Cho H, Hamada M, Ahn JH, Weon HY, Joa JH, Suzuki KI, Kwon SW, Kim SJInt J Syst Evol Microbiol10.1099/ijsem.0.0017012017Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistryTranscriptome
Phylogeny28036250Actinotalea caeni sp. nov., isolated from a sludge sample of a biofilm reactor.Jin L, Ko SR, Lee CS, Ahn CY, Lee JS, Lee KC, Oh HM, Lee HGInt J Syst Evol Microbiol10.1099/ijsem.0.0017692017Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, *Biofilms, Bioreactors/*microbiology, DNA, Bacterial/genetics, Fatty Acids/chemistry, Glycolipids/chemistry, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Sewage/*microbiology, Ubiquinone/chemistryTranscriptome
Phylogeny29458505Actinotalea solisilvae sp. nov., isolated from forest soil and emended description of the genus Actinotalea.Yan ZF, Lin P, Li CT, Kook M, Yi THInt J Syst Evol Microbiol10.1099/ijsem.0.0025842018Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Forests, Glycolipids/chemistry, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/chemistryTranscriptome
Phylogeny35208832Physiological and Genomic Characterization of Actinotalea subterranea sp. nov. from Oil-Degrading Methanogenic Enrichment and Reclassification of the Family Actinotaleaceae.Semenova EM, Grouzdev DS, Sokolova DS, Tourova TP, Poltaraus AB, Potekhina NV, Shishina PN, Bolshakova MA, Avtukh AN, Ianutsevich EA, Tereshina VM, Nazina TNMicroorganisms10.3390/microorganisms100203782022

Reference

@idauthorstitledoi/urlID_cross_referencepubmedcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
30960Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172729028776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67613Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-112671Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 112671)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
91645Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID400521.1