Strain identifier
BacDive ID: 133961
Type strain: 
Species: Chryseobacterium kwangjuense
Strain Designation: KJ1R5
Strain history: K. D. Kim KJ1R5.
NCBI tax ID(s): 267125 (species)
version 8.1 (current version)
General
@ref: 30958
BacDive-ID: 133961
keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped
description: Chryseobacterium kwangjuense KJ1R5 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from plant associated.
NCBI tax id
- NCBI tax id: 267125
- Matching level: species
strain history
- @ref: 67770
- history: K. D. Kim KJ1R5.
doi: 10.13145/bacdive133961.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Flavobacteriia
- order: Flavobacteriales
- family: Weeksellaceae
- genus: Chryseobacterium
- species: Chryseobacterium kwangjuense
- full scientific name: Chryseobacterium kwangjuense Sang et al. 2013
@ref: 30958
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Flavobacteriaceae
genus: Chryseobacterium
species: Chryseobacterium kwangjuense
strain designation: KJ1R5
type strain: yes
Morphology
cell morphology
- @ref: 30958
- gram stain: negative
- cell length: 1.75 µm
- cell width: 0.9 µm
- cell shape: rod-shaped
- motility: no
pigmentation
- @ref: 30958
- production: yes
Culture and growth conditions
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 30958 | positive | growth | 10-38 | |
| 30958 | positive | optimum | 33 | mesophilic |
| 67770 | positive | growth | 30 | mesophilic |
culture pH
| @ref | ability | type | pH |
|---|---|---|---|
| 30958 | positive | growth | 6.0-8.0 |
| 30958 | positive | optimum | 7.5 |
Physiology and metabolism
oxygen tolerance
- @ref: 30958
- oxygen tolerance: aerobe
spore formation
- @ref: 30958
- spore formation: no
halophily
- @ref: 30958
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: 01-03 %
observation
- @ref: 67770
- observation: quinones: MK-6
metabolite utilization
- @ref: 30958
- Chebi-ID: 4853
- metabolite: esculin
- utilization activity: +
- kind of utilization tested: hydrolysis
enzymes
- @ref: 30958
- value: gelatinase
- activity: +
Isolation, sampling and environmental information
isolation
| @ref | sample type | host species | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|---|
| 30958 | plant associated | |||||
| 67770 | Root of pepper (Capsicum annuum L.) in Kwangju | Capsicum annuum L. | Jeonnam Province | Republic of Korea | KOR | Asia |
isolation source categories
- Cat1: #Host
- Cat2: #Plants
taxonmaps
- @ref: 69479
- File name: preview.99_2739.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_76;96_753;97_1459;98_2125;99_2739&stattab=map
- Last taxonomy: Chryseobacterium kwangjuense subclade
- 16S sequence: AY514021
- Sequence Identity:
- Total samples: 2914
- soil counts: 346
- aquatic counts: 1339
- animal counts: 1138
- plant counts: 91
Sequence information
16S sequences
- @ref: 30958
- description: Chryseobacterium kwangjuense strain KJ1R5 16S ribosomal RNA gene, partial sequence
- accession: AY514021
- length: 1432
- database: nuccore
- NCBI tax ID: 267125
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Chryseobacterium kwangjuense KJ1R5 | GCA_001563495 | contig | ncbi | 267125 |
| 66792 | Chryseobacterium kwangjuense KJ1R5 | 2728369107 | draft | img | 267125 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 30958 | 40.2 | |
| 67770 | 40.2 | thermal denaturation, midpoint method (Tm) |
External links
@ref: 30958
culture collection no.: KACC 13029, JCM 15904
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 23315413 | Chryseobacterium kwangjuense sp. nov., isolated from pepper (Capsicum annuum L.) root. | Sang MK, Kim HS, Myung IS, Ryu CM, Kim BS, Kim KD | Int J Syst Evol Microbiol | 10.1099/ijs.0.048496-0 | 2013 | Bacterial Typing Techniques, Base Composition, Capsicum/*microbiology, Chryseobacterium/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, Plant Roots/microbiology, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/analysis | Genetics |
| Genetics | 27103726 | Draft Genome Sequence of a Biocontrol Rhizobacterium, Chryseobacterium kwangjuense Strain KJ1R5, Isolated from Pepper (Capsicum annuum). | Jeong JJ, Park H, Park BH, Mannaa M, Sang MK, Choi IG, Kim KD | Genome Announc | 10.1128/genomeA.00301-16 | 2016 | Phylogeny | |
| Phylogeny | 31332473 | Draft genome and description of Chryseobacterium phocaeense sp. nov.: a new bacterial species isolated from the sputum of a cystic fibrosis patient. | Abou Abdallah R, Okdah L, Bou Khalil J, Anani H, Fournier PE, Raoult D, Bittar F | Arch Microbiol | 10.1007/s00203-019-01704-1 | 2019 | Adolescent, Base Composition, Chryseobacterium/chemistry/*classification/*genetics, Cystic Fibrosis/*microbiology, DNA, Bacterial/genetics, Fatty Acids/analysis, Female, Genome, Bacterial/genetics, Humans, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Homology, Nucleic Acid, Species Specificity, Sputum/microbiology | Genetics |
Reference
| @id | authors | title | doi/url | ID_cross_reference | pubmed |
|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
| 30958 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 27288 | 28776041 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | ||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |