Strain identifier
BacDive ID: 13396
Type strain: 
Species: Pseudonocardia spinosa
Strain Designation: MB SH-1
Strain history: KCC A-0136 <-- A. Henssen MB SH-1.
NCBI tax ID(s): 721033 (species)
version 8.1 (current version)
General
@ref: 16414
BacDive-ID: 13396
DSM-Number: 45367
keywords: 16S sequence, Bacteria, mesophilic
description: Pseudonocardia spinosa MB SH-1 is a mesophilic bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 721033
- Matching level: species
strain history
| @ref | history |
|---|---|
| 16414 | <- T. Kudo, JCM/RIKEN; JCM 3136 <- KCC; KCC A-0136 <- A. Henssen; MB SH-1 |
| 67770 | KCC A-0136 <-- A. Henssen MB SH-1. |
doi: 10.13145/bacdive13396.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Pseudonocardiales
- family: Pseudonocardiaceae
- genus: Pseudonocardia
- species: Pseudonocardia spinosa
- full scientific name: Pseudonocardia spinosa Schäfer 1971 (Approved Lists 1980)
@ref: 16414
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Pseudonocardiaceae
genus: Pseudonocardia
species: Pseudonocardia spinosa
full scientific name: Pseudonocardia spinosa Schäfer 1971
strain designation: MB SH-1
type strain: yes
Morphology
multimedia
- @ref: 16414
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_45367.jpg
- caption: Medium 65 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 16414 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
| 16414 | YEAST STARCH AGAR (A) (DSMZ Medium 1027) | yes | https://mediadive.dsmz.de/medium/1027 | Name: YEAST STARCH AGAR (A) (DSMZ Medium 1027) Composition: Agar 15.0 g/l Starch 10.0 g/l Yeast extract 2.0 g/l Distilled water |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 16414 | positive | growth | 28 | mesophilic |
| 67770 | positive | growth | 28 | mesophilic |
Isolation, sampling and environmental information
isolation
| @ref | sample type | country | origin.country | continent |
|---|---|---|---|---|
| 16414 | soil | Turkey | TUR | |
| 67770 | Soil | Turkey | TUR | Asia |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_59719.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_18375;97_32288;98_41388;99_59719&stattab=map
- Last taxonomy: Pseudonocardia spinosa subclade
- 16S sequence: AB547126
- Sequence Identity:
- Total samples: 1151
- soil counts: 891
- aquatic counts: 72
- animal counts: 89
- plant counts: 99
Safety information
risk assessment
- @ref: 16414
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 16414
- description: Pseudonocardia spinosa gene for 16S rRNA, partial sequence
- accession: AB547126
- length: 1468
- database: ena
- NCBI tax ID: 721033
External links
@ref: 16414
culture collection no.: DSM 45367, ATCC 25924, CBS 818.70, IFO 16002, JCM 3136, KCC A-0136, NBRC 16002
straininfo link
- @ref: 82593
- straininfo: 62687
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 16414 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45367) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-45367 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 82593 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID62687.1 | StrainInfo: A central database for resolving microbial strain identifiers |