Strain identifier

BacDive ID: 133952

Type strain: Yes

Species: Nocardioides marinquilinus

Strain Designation: CL-GY44

Strain history: B. C. Cho CL-GY44.

NCBI tax ID(s): 1210400 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 30934

BacDive-ID: 133952

keywords: 16S sequence, Bacteria, aerobe, Gram-positive, rod-shaped

description: Nocardioides marinquilinus CL-GY44 is an aerobe, Gram-positive, rod-shaped bacterium that was isolated from seawater.

NCBI tax id

  • NCBI tax id: 1210400
  • Matching level: species

strain history

  • @ref: 67770
  • history: B. C. Cho CL-GY44.

doi: 10.13145/bacdive133952.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Propionibacteriales
  • family: Nocardioidaceae
  • genus: Nocardioides
  • species: Nocardioides marinquilinus
  • full scientific name: Nocardioides marinquilinus Cho et al. 2013

@ref: 30934

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Propionibacteriales

family: Nocardioidaceae

genus: Nocardioides

species: Nocardioides marinquilinus

strain designation: CL-GY44

type strain: yes

Morphology

cell morphology

  • @ref: 30934
  • gram stain: positive
  • cell length: 1.8 µm
  • cell width: 0.65 µm
  • cell shape: rod-shaped
  • motility: no

pigmentation

  • @ref: 30934
  • production: yes

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
30934positivegrowth10-35
30934positiveoptimum30mesophilic
67770positivegrowth28mesophilic

culture pH

@refabilitytypepHPH range
30934positivegrowth6.0-9.5alkaliphile
30934positiveoptimum7

Physiology and metabolism

oxygen tolerance

  • @ref: 30934
  • oxygen tolerance: aerobe

spore formation

  • @ref: 30934
  • spore formation: no

observation

@refobservation
30934aggregates in clumps
67770quinones: MK-8(H4)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3093417057cellobiose+carbon source
3093428260galactose+carbon source
30934506227N-acetylglucosamine+carbon source
3093426271proline+carbon source
3093415361pyruvate+carbon source
3093416634raffinose+carbon source
3093417814salicin+carbon source
3093417992sucrose+carbon source
3093427082trehalose+carbon source
309344853esculin+hydrolysis

enzymes

@refvalueactivityec
30934acid phosphatase+3.1.3.2
30934alkaline phosphatase+3.1.3.1
30934alpha-galactosidase+3.2.1.22
30934catalase+1.11.1.6
30934gelatinase+
30934urease+3.5.1.5

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
30934seawater
67770Coastal seawater of Gwangyang BayRepublic of KoreaKORAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Marine

taxonmaps

  • @ref: 69479
  • File name: preview.99_151353.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_142;96_57401;97_74250;98_99982;99_151353&stattab=map
  • Last taxonomy: Nocardioides marinquilinus subclade
  • 16S sequence: JX164255
  • Sequence Identity:
  • Total samples: 1353
  • soil counts: 432
  • aquatic counts: 163
  • animal counts: 559
  • plant counts: 199

Sequence information

16S sequences

  • @ref: 30934
  • description: Nocardioides marinquilinus strain CL-GY44 16S ribosomal RNA gene, partial sequence
  • accession: JX164255
  • length: 1429
  • database: nuccore
  • NCBI tax ID: 1210400

GC content

@refGC-contentmethod
3093471.6
6777071.6high performance liquid chromatography (HPLC)

External links

@ref: 30934

culture collection no.: KCCM 90109, JCM 18459

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny23264497Nocardioides marinquilinus sp. nov., isolated from coastal seawater.Cho Y, Jang GI, Cho BCInt J Syst Evol Microbiol10.1099/ijs.0.047902-02012Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/analysisGenetics
Phylogeny25951861Nocardioides antarcticus sp. nov., isolated from marine sediment.Deng S, Chang X, Zhang Y, Ren L, Jiang F, Qu Z, Peng FInt J Syst Evol Microbiol10.1099/ijs.0.0003092015Actinomycetales/*classification/genetics/isolation & purification, Antarctic Regions, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Molecular Sequence Data, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryGenetics

Reference

@idauthorstitledoi/urlID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
30934Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172726428776041
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/