Strain identifier
BacDive ID: 133952
Type strain:
Species: Nocardioides marinquilinus
Strain Designation: CL-GY44
Strain history: B. C. Cho CL-GY44.
NCBI tax ID(s): 1210400 (species)
version 8.1 (current version)
General
@ref: 30934
BacDive-ID: 133952
keywords: 16S sequence, Bacteria, aerobe, Gram-positive, rod-shaped
description: Nocardioides marinquilinus CL-GY44 is an aerobe, Gram-positive, rod-shaped bacterium that was isolated from seawater.
NCBI tax id
- NCBI tax id: 1210400
- Matching level: species
strain history
- @ref: 67770
- history: B. C. Cho CL-GY44.
doi: 10.13145/bacdive133952.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Propionibacteriales
- family: Nocardioidaceae
- genus: Nocardioides
- species: Nocardioides marinquilinus
- full scientific name: Nocardioides marinquilinus Cho et al. 2013
@ref: 30934
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Propionibacteriales
family: Nocardioidaceae
genus: Nocardioides
species: Nocardioides marinquilinus
strain designation: CL-GY44
type strain: yes
Morphology
cell morphology
- @ref: 30934
- gram stain: positive
- cell length: 1.8 µm
- cell width: 0.65 µm
- cell shape: rod-shaped
- motility: no
pigmentation
- @ref: 30934
- production: yes
Culture and growth conditions
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
30934 | positive | growth | 10-35 | |
30934 | positive | optimum | 30 | mesophilic |
67770 | positive | growth | 28 | mesophilic |
culture pH
@ref | ability | type | pH | PH range |
---|---|---|---|---|
30934 | positive | growth | 6.0-9.5 | alkaliphile |
30934 | positive | optimum | 7 |
Physiology and metabolism
oxygen tolerance
- @ref: 30934
- oxygen tolerance: aerobe
spore formation
- @ref: 30934
- spore formation: no
observation
@ref | observation |
---|---|
30934 | aggregates in clumps |
67770 | quinones: MK-8(H4) |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
30934 | 17057 | cellobiose | + | carbon source |
30934 | 28260 | galactose | + | carbon source |
30934 | 506227 | N-acetylglucosamine | + | carbon source |
30934 | 26271 | proline | + | carbon source |
30934 | 15361 | pyruvate | + | carbon source |
30934 | 16634 | raffinose | + | carbon source |
30934 | 17814 | salicin | + | carbon source |
30934 | 17992 | sucrose | + | carbon source |
30934 | 27082 | trehalose | + | carbon source |
30934 | 4853 | esculin | + | hydrolysis |
enzymes
@ref | value | activity | ec |
---|---|---|---|
30934 | acid phosphatase | + | 3.1.3.2 |
30934 | alkaline phosphatase | + | 3.1.3.1 |
30934 | alpha-galactosidase | + | 3.2.1.22 |
30934 | catalase | + | 1.11.1.6 |
30934 | gelatinase | + | |
30934 | urease | + | 3.5.1.5 |
Isolation, sampling and environmental information
isolation
@ref | sample type | country | origin.country | continent |
---|---|---|---|---|
30934 | seawater | |||
67770 | Coastal seawater of Gwangyang Bay | Republic of Korea | KOR | Asia |
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
- Cat3: #Marine
taxonmaps
- @ref: 69479
- File name: preview.99_151353.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_142;96_57401;97_74250;98_99982;99_151353&stattab=map
- Last taxonomy: Nocardioides marinquilinus subclade
- 16S sequence: JX164255
- Sequence Identity:
- Total samples: 1353
- soil counts: 432
- aquatic counts: 163
- animal counts: 559
- plant counts: 199
Sequence information
16S sequences
- @ref: 30934
- description: Nocardioides marinquilinus strain CL-GY44 16S ribosomal RNA gene, partial sequence
- accession: JX164255
- length: 1429
- database: nuccore
- NCBI tax ID: 1210400
GC content
@ref | GC-content | method |
---|---|---|
30934 | 71.6 | |
67770 | 71.6 | high performance liquid chromatography (HPLC) |
External links
@ref: 30934
culture collection no.: KCCM 90109, JCM 18459
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 23264497 | Nocardioides marinquilinus sp. nov., isolated from coastal seawater. | Cho Y, Jang GI, Cho BC | Int J Syst Evol Microbiol | 10.1099/ijs.0.047902-0 | 2012 | Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/analysis | Genetics |
Phylogeny | 25951861 | Nocardioides antarcticus sp. nov., isolated from marine sediment. | Deng S, Chang X, Zhang Y, Ren L, Jiang F, Qu Z, Peng F | Int J Syst Evol Microbiol | 10.1099/ijs.0.000309 | 2015 | Actinomycetales/*classification/genetics/isolation & purification, Antarctic Regions, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Molecular Sequence Data, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
Reference
@id | authors | title | doi/url | ID_cross_reference | pubmed |
---|---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
30934 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 27264 | 28776041 |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |