Strain identifier
BacDive ID: 13392
Type strain: 
Species: Pseudonocardia dioxanivorans
Strain history: DSM 44775 <-- S. Mahendra CB1190 <-- R. Parales.
NCBI tax ID(s): 675635 (strain), 240495 (species)
version 8.1 (current version)
General
@ref: 12080
BacDive-ID: 13392
DSM-Number: 44775
keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive, rod-shaped
description: Pseudonocardia dioxanivorans DSM 44775 is an aerobe, spore-forming, mesophilic bacterium that builds an aerial mycelium and was isolated from industrial sludge.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 675635 | strain |
| 240495 | species |
strain history
| @ref | history |
|---|---|
| 12080 | <- S. Mahendra; CB1190 <- R. Parales |
| 67770 | DSM 44775 <-- S. Mahendra CB1190 <-- R. Parales. |
doi: 10.13145/bacdive13392.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Pseudonocardiales
- family: Pseudonocardiaceae
- genus: Pseudonocardia
- species: Pseudonocardia dioxanivorans
- full scientific name: Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005
@ref: 12080
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Pseudonocardiaceae
genus: Pseudonocardia
species: Pseudonocardia dioxanivorans
full scientific name: Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005
type strain: yes
Morphology
cell morphology
| @ref | gram stain | cell shape | motility | confidence |
|---|---|---|---|---|
| 31226 | positive | rod-shaped | no | |
| 69480 | positive | 100 |
colony morphology
| @ref | colony color | incubation period | medium used |
|---|---|---|---|
| 20113 | Saffron yellow (1017) | 10-14 days | ISP 2 |
| 20113 | Colorless | 10-14 days | ISP 3 |
| 20113 | Colorless | 10-14 days | ISP 4 |
| 20113 | Colorless | 10-14 days | ISP 5 |
| 20113 | Saffron yellow (1017) | 10-14 days | ISP 6 |
| 20113 | Colorless | 10-14 days | ISP 7 |
multicellular morphology
| @ref | forms multicellular complex | complex name | complex color | medium name |
|---|---|---|---|---|
| 20113 | yes | Aerial Mycelium | Cream | ISP 2 |
| 20113 | yes | Aerial Mycelium | Cream | ISP 3 |
| 20113 | yes | Aerial Mycelium | Cream | ISP 4 |
| 20113 | yes | Aerial Mycelium | Cream | ISP 5 |
| 20113 | yes | Aerial Mycelium | Cream | ISP 6 |
| 20113 | yes | Aerial Mycelium | ISP 7 |
multimedia
- @ref: 12080
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_44775.jpg
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 12080 | GPHF-MEDIUM (DSMZ Medium 553) | yes | https://mediadive.dsmz.de/medium/553 | Name: GPHF-MEDIUM (DSMZ Medium 553) Composition: Agar 20.0 g/l Glucose 10.0 g/l Beef extract 5.0 g/l Yeast extract 5.0 g/l Casein peptone 5.0 g/l CaCl2 x 2 H2O 0.74 g/l Distilled water |
| 12080 | STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) | yes | https://mediadive.dsmz.de/medium/252 | Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 14.985 g/l Starch 9.99001 g/l (NH4)2SO4 1.998 g/l CaCO3 1.998 g/l K2HPO4 0.999001 g/l MgSO4 x 7 H2O 0.999001 g/l NaCl 0.999001 g/l FeSO4 x 7 H2O 0.000999001 g/l MnCl2 x 4 H2O 0.000999001 g/l ZnSO4 x 7 H2O 0.000999001 g/l Distilled water |
| 20113 | ISP 2 | yes | Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes | |
| 20113 | ISP 3 | yes | Name: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms: | |
| 20113 | ISP 4 | yes | Name: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml | |
| 20113 | ISP 5 | yes | Name: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes | |
| 20113 | ISP 6 | yes | Name: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes | |
| 20113 | ISP 7 | yes | Name: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 12080 | positive | growth | 28 | mesophilic |
| 20113 | positive | optimum | 28 | mesophilic |
| 31226 | positive | growth | 10-37 | |
| 31226 | positive | optimum | 30 | mesophilic |
| 67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 31226
- oxygen tolerance: aerobe
spore formation
- @ref: 69480
- spore formation: yes
- confidence: 92.283
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 31226 | NaCl | positive | growth | <5 % |
| 31226 | NaCl | positive | optimum | 2.5 % |
observation
- @ref: 67770
- observation: quinones: MK-8(H4), MK-7(H4)
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 20113 | 17234 | glucose | + | |
| 20113 | 22599 | arabinose | + | |
| 20113 | 17992 | sucrose | + | |
| 20113 | 18222 | xylose | + | |
| 20113 | 17268 | myo-inositol | - | |
| 20113 | 29864 | mannitol | - | |
| 20113 | 28757 | fructose | - | |
| 20113 | 26546 | rhamnose | + | |
| 20113 | 16634 | raffinose | + | |
| 20113 | 62968 | cellulose | + | |
| 31226 | 21217 | L-alaninamide | + | carbon source |
| 31226 | 17057 | cellobiose | + | carbon source |
| 31226 | 28757 | fructose | + | carbon source |
| 31226 | 28260 | galactose | + | carbon source |
| 31226 | 24265 | gluconate | + | carbon source |
| 31226 | 29864 | mannitol | + | carbon source |
| 31226 | 17148 | putrescine | + | carbon source |
| 31226 | 26546 | rhamnose | + | carbon source |
| 31226 | 33942 | ribose | + | carbon source |
| 31226 | 17814 | salicin | + | carbon source |
| 31226 | 30031 | succinate | + | carbon source |
| 31226 | 27082 | trehalose | + | carbon source |
| 31226 | 17151 | xylitol | + | carbon source |
| 31226 | 18222 | xylose | + | carbon source |
| 68369 | 25115 | malate | - | assimilation |
| 68369 | 17128 | adipate | - | assimilation |
| 68369 | 27689 | decanoate | - | assimilation |
| 68369 | 24265 | gluconate | - | assimilation |
| 68369 | 59640 | N-acetylglucosamine | - | assimilation |
| 68369 | 16899 | D-mannitol | - | assimilation |
| 68369 | 16024 | D-mannose | - | assimilation |
| 68369 | 30849 | L-arabinose | + | assimilation |
| 68369 | 17634 | D-glucose | + | assimilation |
| 68369 | 5291 | gelatin | - | hydrolysis |
| 68369 | 16199 | urea | - | hydrolysis |
| 68369 | 29016 | arginine | - | hydrolysis |
| 68369 | 17634 | D-glucose | - | fermentation |
| 68369 | 27897 | tryptophan | - | energy source |
| 68369 | 17632 | nitrate | - | reduction |
metabolite production
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 68369 | gelatinase | - | |
| 68369 | urease | - | 3.5.1.5 |
| 68369 | arginine dihydrolase | - | 3.5.3.6 |
| 68382 | lipase (C 14) | - | |
| 68382 | leucine arylamidase | + | 3.4.11.1 |
| 68382 | cystine arylamidase | - | 3.4.11.3 |
| 68382 | trypsin | - | 3.4.21.4 |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 |
| 68382 | naphthol-AS-BI-phosphohydrolase | - | |
| 68382 | alpha-galactosidase | - | 3.2.1.22 |
| 68382 | beta-galactosidase | - | 3.2.1.23 |
| 68382 | beta-glucuronidase | - | 3.2.1.31 |
| 68382 | beta-glucosidase | - | 3.2.1.21 |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
| 68382 | alpha-mannosidase | - | 3.2.1.24 |
| 68382 | alpha-fucosidase | - | 3.2.1.51 |
API zym
| @ref | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase | Control |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20113 | + | + | + | - | + | + | - | - | - | + | - | - | - | - | + | - | - | - | - | |
| 12080 | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
API 20NE
| @ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 12080 | - | - | - | - | - | +/- | - | - | + | + | - | - | - | +/- | - | - | - | - | - | - |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 12080 | industrial sludge | South Carolina, Darlington | USA | USA | North America |
| 67770 | 1,4-Dioxane-contaminated industrial sludge | Darlington, SC | USA | USA | North America |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Industrial | |
| #Environmental | #Terrestrial | #Mud (Sludge) |
taxonmaps
- @ref: 69479
- File name: preview.99_5531.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_2672;97_3280;98_4128;99_5531&stattab=map
- Last taxonomy: Pseudonocardia
- 16S sequence: AY340622
- Sequence Identity:
- Total samples: 1848
- soil counts: 1233
- aquatic counts: 241
- animal counts: 242
- plant counts: 132
Safety information
risk assessment
| @ref | biosafety level | biosafety level comment |
|---|---|---|
| 12080 | 1 | Risk group (German classification) |
| 20113 | 1 | German classification |
Sequence information
16S sequences
- @ref: 31226
- description: Pseudonocardia dioxanivorans 16S ribosomal RNA gene, partial sequence
- accession: AY340622
- length: 1422
- database: nuccore
- NCBI tax ID: 675635
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Pseudonocardia dioxanivorans CB1190 | GCA_000196675 | chromosome | ncbi | 675635 |
| 66792 | Pseudonocardia dioxanivorans CB1190 | 675635.33 | plasmid | patric | 675635 |
| 66792 | Pseudonocardia dioxanivorans CB1190 | 675635.32 | plasmid | patric | 675635 |
| 66792 | Pseudonocardia dioxanivorans CB1190 | 675635.11 | complete | patric | 675635 |
| 66792 | Pseudonocardia dioxanivorans CB1190 | 651053061 | complete | img | 675635 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 12080 | 74 | |
| 67770 | 74 | high performance liquid chromatography (HPLC) |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 84 | no |
| motile | no | 91.009 | no |
| motile | no | 91.009 | no |
| flagellated | no | 98.587 | yes |
| flagellated | no | 98.587 | yes |
| gram-positive | yes | 87.78 | no |
| gram-positive | yes | 87.78 | no |
| anaerobic | no | 98.937 | yes |
| anaerobic | no | 98.937 | yes |
| aerobic | yes | 90.512 | yes |
| aerobic | yes | 90.512 | yes |
| halophile | no | 94.482 | no |
| halophile | no | 94.482 | no |
| spore-forming | yes | 71.148 | no |
| spore-forming | yes | 71.148 | no |
| thermophile | no | 99.194 | yes |
| thermophile | no | 99.194 | yes |
| glucose-util | yes | 87.788 | no |
| glucose-util | yes | 87.788 | no |
| glucose-ferment | no | 91.289 | no |
| glucose-ferment | no | 91.289 | no |
External links
@ref: 12080
culture collection no.: DSM 44775, ATCC 55486, JCM 13855, CB 1190
straininfo link
- @ref: 82589
- straininfo: 118565
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 15774630 | Pseudonocardia dioxanivorans sp. nov., a novel actinomycete that grows on 1,4-dioxane. | Mahendra S, Alvarez-Cohen L | Int J Syst Evol Microbiol | 10.1099/ijs.0.63085-0 | 2005 | Actinomycetales/chemistry/*classification/genetics/*growth & development, Bacterial Typing Techniques, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Dioxanes/*metabolism, Fatty Acids/analysis, Industrial Waste, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sewage/microbiology | Genetics |
| Enzymology | 16999122 | Kinetics of 1,4-dioxane biodegradation by monooxygenase-expressing bacteria. | Mahendra S, Alvarez-Cohen L | Environ Sci Technol | 10.1021/es060714v | 2006 | Bacteria/*enzymology, Chromatography, Gas, Dioxanes/*metabolism/toxicity, Kinetics, Mixed Function Oxygenases/*metabolism | Metabolism |
| Metabolism | 19731666 | Aerobic biotransformation of polybrominated diphenyl ethers (PBDEs) by bacterial isolates. | Robrock KR, Coelhan M, Sedlak DL, Alvarez-Cohent L | Environ Sci Technol | 10.1021/es900411k | 2009 | *Biodegradation, Environmental, Biotransformation, Bromides/chemistry, Burkholderia/metabolism, Chlorine/chemistry, Environment, Environmental Pollutants, Ethers/chemistry, Gas Chromatography-Mass Spectrometry/methods, Halogenated Diphenyl Ethers/*chemistry/metabolism, Models, Statistical, Rhodococcus/metabolism, Time Factors | |
| Metabolism | 20199795 | 1,4-Dioxane biodegradation at low temperatures in Arctic groundwater samples. | Li M, Fiorenza S, Chatham JR, Mahendra S, Alvarez PJ | Water Res | 10.1016/j.watres.2010.02.007 | 2010 | Alaska, *Biodegradation, Environmental, *Cold Temperature, Dioxanes/*metabolism, Fresh Water/chemistry/microbiology, Soil Microbiology, Water Microbiology, Water Pollutants, Chemical/*metabolism, Water Purification/methods | Enzymology |
| Genetics | 21725009 | Genome sequence of the 1,4-dioxane-degrading Pseudonocardia dioxanivorans strain CB1190. | Sales CM, Mahendra S, Grostern A, Parales RE, Goodwin LA, Woyke T, Nolan M, Lapidus A, Chertkov O, Ovchinnikova G, Sczyrba A, Alvarez-Cohen L | J Bacteriol | 10.1128/JB.00415-11 | 2011 | Actinomycetales/*classification/*genetics/*metabolism, Biodegradation, Environmental, DNA, Bacterial/genetics, Dioxanes/*metabolism, *Genome, Bacterial, Mixed Function Oxygenases/metabolism, Molecular Sequence Data, Plasmids, Sequence Analysis, DNA/methods | Metabolism |
| Metabolism | 22327578 | Glyoxylate metabolism is a key feature of the metabolic degradation of 1,4-dioxane by Pseudonocardia dioxanivorans strain CB1190. | Grostern A, Sales CM, Zhuang WQ, Erbilgin O, Alvarez-Cohen L | Appl Environ Microbiol | 10.1128/AEM.00067-12 | 2012 | Actinomycetales/*metabolism, Biotransformation, Carbon/metabolism, Chromosomes, Bacterial, DNA, Bacterial/chemistry/genetics, Dioxanes/*metabolism, Energy Metabolism, Gene Expression, Gene Expression Profiling, Glyoxylates/*metabolism, Isotope Labeling, Metabolic Networks and Pathways/*genetics, Metabolism, Microarray Analysis, Models, Biological, Molecular Sequence Data, Multigene Family, Plasmids, Pyruvic Acid/metabolism, Rhodococcus/genetics, Sequence Analysis, DNA | Genetics |
| Metabolism | 23237300 | The impact of chlorinated solvent co-contaminants on the biodegradation kinetics of 1,4-dioxane. | Mahendra S, Grostern A, Alvarez-Cohen L | Chemosphere | 10.1016/j.chemosphere.2012.10.104 | 2012 | Biodegradation, Environmental, Dichloroethylenes/analysis/metabolism, Dioxanes/*analysis/metabolism, Kinetics, Trichloroethanes/analysis/metabolism, Water Microbiology, Water Pollutants, Chemical/*analysis/metabolism | Enzymology |
| Phylogeny | 23239086 | Isolation and characterization of bacterial strains that have high ability to degrade 1,4-dioxane as a sole carbon and energy source. | Sei K, Miyagaki K, Kakinoki T, Fukugasako K, Inoue D, Ike M | Biodegradation | 10.1007/s10532-012-9614-1 | 2012 | Bacteria/drug effects/enzymology/growth & development/*isolation & purification, Biodegradation, Environmental/drug effects, Carbon/*pharmacology, Dioxanes/*metabolism, Energy Metabolism/*drug effects, Ethers, Cyclic/metabolism, Ethylene Glycol/pharmacology, Hydrogen-Ion Concentration/drug effects, Kinetics, Phylogeny, Temperature | Enzymology |
| Metabolism | 23663433 | RubisCO-based CO2 fixation and C1 metabolism in the actinobacterium Pseudonocardia dioxanivorans CB1190. | Grostern A, Alvarez-Cohen L | Environ Microbiol | 10.1111/1462-2920.12144 | 2013 | Actinomycetales/enzymology/genetics/*metabolism, Carbon Dioxide/metabolism, Chemoautotrophic Growth/*genetics, Multigene Family, Oxidation-Reduction, Photosynthesis/*genetics, Ribulose-Bisphosphate Carboxylase/*genetics/metabolism | Enzymology |
| Metabolism | 24096414 | Oxidation of the cyclic ethers 1,4-dioxane and tetrahydrofuran by a monooxygenase in two Pseudonocardia species. | Sales CM, Grostern A, Parales JV, Parales RE, Alvarez-Cohen L | Appl Environ Microbiol | 10.1128/AEM.02418-13 | 2013 | Acetates/metabolism, Actinomycetales/*enzymology/*metabolism, Cloning, Molecular, Dioxanes/*metabolism, Ethers, Cyclic/*metabolism, Furans/*metabolism, Gene Expression Profiling, Mixed Function Oxygenases/*metabolism, Multigene Family, Oxidation-Reduction, Rhodococcus/genetics/metabolism, Transcription, Genetic | Enzymology |
| Metabolism | 24627120 | Transition metals and organic ligands influence biodegradation of 1,4-dioxane. | Pornwongthong P, Mulchandani A, Gedalanga PB, Mahendra S | Appl Biochem Biotechnol | 10.1007/s12010-014-0841-2 | 2014 | Actinomycetales/*metabolism, Biodegradation, Environmental, Dioxanes/chemistry/*metabolism, Metals/*chemistry/metabolism, Water Pollutants, Chemical/chemistry/metabolism | |
| Metabolism | 24632253 | Identification of biomarker genes to predict biodegradation of 1,4-dioxane. | Gedalanga PB, Pornwongthong P, Mora R, Chiang SY, Baldwin B, Ogles D, Mahendra S | Appl Environ Microbiol | 10.1128/AEM.04162-13 | 2014 | Actinomycetales/enzymology/*genetics/isolation & purification/*metabolism, Alcohol Dehydrogenase/genetics/metabolism, Aldehyde Dehydrogenase/genetics/metabolism, Bacterial Proteins/*genetics/metabolism, Biotransformation, Dioxanes/*metabolism, Genetic Markers, Sewage/*microbiology, Waste Water/*microbiology | Enzymology |
| Enzymology | 27486928 | Biodegradation Kinetics of 1,4-Dioxane in Chlorinated Solvent Mixtures. | Zhang S, Gedalanga PB, Mahendra S | Environ Sci Technol | 10.1021/acs.est.6b02797 | 2016 | *Biodegradation, Environmental, Groundwater, Kinetics, Solvents, Trichloroethylene, *Water Pollutants, Chemical | Metabolism |
| Metabolism | 27623820 | 1,4-Dioxane degradation potential of members of the genera Pseudonocardia and Rhodococcus. | Inoue D, Tsunoda T, Sawada K, Yamamoto N, Saito Y, Sei K, Ike M | Biodegradation | 10.1007/s10532-016-9772-7 | 2016 | Actinomycetales/*metabolism, Biodegradation, Environmental, Dioxanes/*metabolism, Furans/metabolism, Rhodococcus/*metabolism | |
| Metabolism | 28161562 | Hindrance of 1,4-dioxane biodegradation in microcosms biostimulated with inducing or non-inducing auxiliary substrates. | Li M, Liu Y, He Y, Mathieu J, Hatton J, DiGuiseppi W, Alvarez PJ | Water Res | 10.1016/j.watres.2017.01.047 | 2017 | 1-Butanol, Actinomycetales/*metabolism, Bacteria, *Biodegradation, Environmental, Groundwater | |
| Metabolism | 29023103 | Synergistic Treatment of Mixed 1,4-Dioxane and Chlorinated Solvent Contaminations by Coupling Electrochemical Oxidation with Aerobic Biodegradation. | Jasmann JR, Gedalanga PB, Borch T, Mahendra S, Blotevogel J | Environ Sci Technol | 10.1021/acs.est.7b03134 | 2017 | *Biodegradation, Environmental, *Dioxanes, *Groundwater, Oxidation-Reduction, Solvents, Water Pollutants, Chemical | |
| Phylogeny | 29464325 | Detection and cell sorting of Pseudonocardia species by fluorescence in situ hybridization and flow cytometry using 16S rRNA-targeted oligonucleotide probes. | Li M, Yang Y, He Y, Mathieu J, Yu C, Li Q, Alvarez PJJ | Appl Microbiol Biotechnol | 10.1007/s00253-018-8801-3 | 2018 | Actinomycetales/*genetics/*isolation & purification, *Flow Cytometry, *In Situ Hybridization, Fluorescence, Microbiological Techniques/*methods, Oligonucleotide Probes/genetics/metabolism, RNA, Ribosomal, 16S/*genetics | Enzymology |
| Metabolism | 29477886 | Aerobic biodegradation kinetics for 1,4-dioxane under metabolic and cometabolic conditions. | Barajas-Rodriguez FJ, Freedman DL | J Hazard Mater | 10.1016/j.jhazmat.2018.02.030 | 2018 | Actinobacteria/*metabolism, Biodegradation, Environmental, Dioxanes/*metabolism, Kinetics, Rhodococcus/*metabolism, Water Pollutants, Chemical/*metabolism | Enzymology |
| Genetics | 29622610 | Draft Genome Sequence of the 1,4-Dioxane-Degrading Bacterium Pseudonocardia dioxanivorans BERK-1. | Ramos-Garcia AA, Shankar V, Saski CA, Hsiang T, Freedman DL | Genome Announc | 10.1128/genomeA.00207-18 | 2018 | ||
| Metabolism | 29879691 | Abiotic and bioaugmented granular activated carbon for the treatment of 1,4-dioxane-contaminated water. | Myers MA, Johnson NW, Marin EZ, Pornwongthong P, Liu Y, Gedalanga PB, Mahendra S | Environ Pollut | 10.1016/j.envpol.2018.04.011 | 2018 | Adsorption, Bacteria/metabolism, Carbon, Charcoal/*chemistry, Dioxanes/*analysis/chemistry, Groundwater, Metabolic Networks and Pathways, Waste Water/analysis, Water Pollutants, Chemical/analysis/*chemistry, Water Pollution/analysis, Water Purification/*methods | Enzymology |
| Metabolism | 30216889 | Co-contaminant effects on 1,4-dioxane biodegradation in packed soil column flow-through systems. | Zhao L, Lu X, Polasko A, Johnson NW, Miao Y, Yang Z, Mahendra S, Gu B | Environ Pollut | 10.1016/j.envpol.2018.09.018 | 2018 | Biodegradation, Environmental/*drug effects, Dioxanes/*toxicity, Groundwater/microbiology, Halogenation, Soil/chemistry, Trichloroethylene, Water Pollutants, Chemical/*toxicity | Pathogenicity |
| 30419469 | Response and recovery of microbial communities subjected to oxidative and biological treatments of 1,4-dioxane and co-contaminants. | Miao Y, Johnson NW, Gedalanga PB, Adamson D, Newell C, Mahendra S | Water Res | 10.1016/j.watres.2018.10.070 | 2018 | Biodegradation, Environmental, Dioxanes, Hydrogen Peroxide, *Microbiota, Oxidative Stress, *Water Pollutants, Chemical | ||
| Metabolism | 31661950 | Mechanisms of 1,4-Dioxane Biodegradation and Adsorption by Bio-Zeolite in the Presence of Chlorinated Solvents: Experimental and Molecular Dynamics Simulation Studies. | Liu Y, Johnson NW, Liu C, Chen R, Zhong M, Dong Y, Mahendra S | Environ Sci Technol | 10.1021/acs.est.9b04154 | 2019 | Adsorption, Dioxanes, *Groundwater, Molecular Dynamics Simulation, Solvents, *Water Pollutants, Chemical, *Zeolites | |
| Metabolism | 32018172 | Monitoring, assessment, and prediction of microbial shifts in coupled catalysis and biodegradation of 1,4-dioxane and co-contaminants. | Miao Y, Johnson NW, Phan T, Heck K, Gedalanga PB, Zheng X, Adamson D, Newell C, Wong MS, Mahendra S | Water Res | 10.1016/j.watres.2020.115540 | 2020 | Biodegradation, Environmental, Catalysis, Dioxanes, *Hydrogen Peroxide, *Water Pollutants, Chemical | |
| 32468172 | Enhanced long-term attenuation of 1,4-dioxane in bioaugmented flow-through aquifer columns. | da Silva MLB, He Y, Mathieu J, Alvarez PJJ | Biodegradation | 10.1007/s10532-020-09903-0 | 2020 | Actinobacteria, Biodegradation, Environmental, Dioxanes, *Groundwater, Pseudonocardia, *Water Pollutants, Chemical | ||
| 32721670 | Bioaugmenting the poplar rhizosphere to enhance treatment of 1,4-dioxane. | Simmer R, Mathieu J, da Silva MLB, Lashmit P, Gopishetty S, Alvarez PJJ, Schnoor JL | Sci Total Environ | 10.1016/j.scitotenv.2020.140823 | 2020 | Actinobacteria, Biodegradation, Environmental, Dioxanes, *Groundwater, Mycobacterium, Pseudonocardia, Rhizosphere, *Water Pollutants, Chemical | ||
| 33189472 | Profiling microbial community structures and functions in bioremediation strategies for treating 1,4-dioxane-contaminated groundwater. | Miao Y, Heintz MB, Bell CH, Johnson NW, Polasko AL, Favero D, Mahendra S | J Hazard Mater | 10.1016/j.jhazmat.2020.124457 | 2020 | Biodegradation, Environmental, Dioxanes, *Groundwater, *Microbiota, Rhodococcus, *Water Pollutants, Chemical | ||
| Phylogeny | 35129703 | Pseudonocardia humida sp. nov., an Actinomycete Isolated from Mangrove Soil Showing Distinct Distribution Pattern of Biosynthetic Gene Clusters. | Zan ZY, Ge XF, Huang RR, Liu WZ | Curr Microbiol | 10.1007/s00284-022-02784-x | 2022 | *Actinobacteria/genetics, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Multigene Family, Phospholipids/analysis, Phylogeny, Pseudonocardia, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Soil, Vitamin K 2 | Transcriptome |
Reference
| @id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed | journal |
|---|---|---|---|---|---|---|---|
| 12080 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 44775) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-44775 | ||||
| 20113 | Wink, J. | http://www.dsmz.de/microorganisms/wink_pdf/DSM44775.pdf | Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig | ||||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | ||||
| 31226 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 27552 | 28776041 | ||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | ||||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 33211880 | Nucleic Acids Res. 49: D498-D508 2020 | ||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |||||
| 68369 | Automatically annotated from API 20NE | ||||||
| 68382 | Automatically annotated from API zym | ||||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | ||||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | ||||
| 82589 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID118565.1 | StrainInfo: A central database for resolving microbial strain identifiers |