Strain identifier
BacDive ID: 133913
Type strain: 
Species: Alkalispirochaeta sphaeroplastigenens
Strain Designation: JC133
Strain history: <- Ch Sasikala, JNT Univ. India
NCBI tax ID(s): 1187066 (species)
version 8.1 (current version)
General
@ref: 30865
BacDive-ID: 133913
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, Gram-negative, motile, spiral-shaped
description: Alkalispirochaeta sphaeroplastigenens JC133 is an anaerobe, Gram-negative, motile bacterium that was isolated from hypersaline environment.
NCBI tax id
- NCBI tax id: 1187066
- Matching level: species
strain history
- @ref: 67771
- history: <- Ch Sasikala, JNT Univ. India
doi: 10.13145/bacdive133913.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/spirochaetota
- domain: Bacteria
- phylum: Spirochaetota
- class: Spirochaetia
- order: Spirochaetales
- family: Spirochaetaceae
- genus: Alkalispirochaeta
- species: Alkalispirochaeta sphaeroplastigenens
- full scientific name: Alkalispirochaeta sphaeroplastigenens (Vishnuvardhan Reddy et al. 2013) Sravanthi et al. 2016
synonyms
- @ref: 20215
- synonym: Spirochaeta sphaeroplastigenens
@ref: 30865
domain: Bacteria
phylum: Spirochaetes
class: Spirochaetes
order: Spirochaetales
family: Spirochaetaceae
genus: Alkalispirochaeta
species: Alkalispirochaeta sphaeroplastigenens
strain designation: JC133
type strain: yes
Morphology
cell morphology
| @ref | gram stain | cell length | cell width | cell shape | motility |
|---|---|---|---|---|---|
| 30865 | negative | 15 µm | 0.2 µm | spiral-shaped | yes |
| 67771 | yes | ||||
| 67771 | negative |
Culture and growth conditions
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 30865 | positive | growth | 15-40 | |
| 30865 | positive | optimum | 37.5 | mesophilic |
| 67771 | positive | growth | 37 | mesophilic |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 30865 | positive | growth | 8.0-10.0 | alkaliphile |
| 30865 | positive | optimum | 9.75 |
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance |
|---|---|
| 30865 | anaerobe |
| 67771 | anaerobe |
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 30865 | NaCl | positive | growth | 0-12 % |
| 30865 | NaCl | positive | optimum | 6.25 % |
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 30865 | 16947 | citrate | + | carbon source |
| 30865 | 28757 | fructose | + | carbon source |
| 30865 | 5291 | gelatin | + | carbon source |
| 30865 | 17234 | glucose | + | carbon source |
| 30865 | 24996 | lactate | + | carbon source |
| 30865 | 17992 | sucrose | + | carbon source |
| 30865 | 18222 | xylose | + | carbon source |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 30865 | hypersaline environment | ||||
| 67771 | From sediment of alkaline soda lake | Lonar lake | India | IND | Asia |
isolation source categories
- Cat1: #Condition
- Cat2: #Saline
taxonmaps
- @ref: 69479
- File name: preview.99_7454.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_642;96_3481;97_4268;98_5462;99_7454&stattab=map
- Last taxonomy: Alkalispirochaeta
- 16S sequence: HE806187
- Sequence Identity:
- Total samples: 382
- soil counts: 26
- aquatic counts: 304
- animal counts: 52
Sequence information
16S sequences
- @ref: 30865
- description: Spirochaeta sphaeroplastigenens partial 16S rRNA gene, type strain JC133T, isolate Sp11
- accession: HE806187
- length: 1466
- database: nuccore
- NCBI tax ID: 1187066
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Alkalispirochaeta sphaeroplastigenens JC133 | GCA_002916695 | contig | ncbi | 1187066 |
| 66792 | Alkalispirochaeta sphaeroplastigenens JC133 | 2791354917 | draft | img | 1187066 |
GC content
- @ref: 30865
- GC-content: 58.2
External links
@ref: 30865
culture collection no.: KCTC 15220, NBRC 109056
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 23148099 | Spirochaeta sphaeroplastigenens sp. nov., a halo-alkaliphilic, obligately anaerobic spirochaete isolated from soda lake Lonar. | Vishnuvardhan Reddy S, Aspana S, Tushar DL, Sasikala C, Ramana CV | Int J Syst Evol Microbiol | 10.1099/ijs.0.046292-0 | 2012 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, India, Lakes/microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Spirochaeta/*classification/genetics/isolation & purification, *Water Microbiology | Genetics |
| Phylogeny | 26377069 | Spirochaeta odontotermitis sp. nov., an obligately anaerobic, cellulolytic, halotolerant, alkaliphilic spirochaete isolated from the termite Odontotermes obesus (Rambur) gut. | Sravanthi T, Tushar L, Sasikala C, Ramana CV | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000616 | 2015 | Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, India, Isoptera/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Spirochaeta/*classification/genetics/isolation & purification | Genetics |
| Phylogeny | 26704619 | Alkalispirochaeta cellulosivorans gen. nov., sp. nov., a cellulose-hydrolysing, alkaliphilic, halotolerant bacterium isolated from the gut of a wood-eating cockroach (Cryptocercus punctulatus), and reclassification of four species of Spirochaeta as new combinations within Alkalispirochaeta gen. nov. | Sravanthi T, Tushar L, Sasikala C, Ramana CV | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000865 | 2015 | Animals, Bacterial Typing Techniques, Base Composition, Cellulose/metabolism, Cockroaches/*microbiology, DNA, Bacterial/genetics, Fatty Acids/chemistry, India, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Spirochaeta/*classification/genetics/isolation & purification, Wood | Genetics |
Reference
| @id | authors | title | doi/url | ID_cross_reference | pubmed |
|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
| 30865 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 27195 | 28776041 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | ||
| 67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |