Strain identifier

BacDive ID: 133901

Type strain: Yes

Species: Chryseobacterium ginsengisoli

Strain history: <- DC Yang, Kyunghee Univ.

NCBI tax ID(s): 363853 (species)

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General

@ref: 30827

BacDive-ID: 133901

keywords: 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped

description: Chryseobacterium ginsengisoli KCTC 23760 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from plant associated.

NCBI tax id

  • NCBI tax id: 363853
  • Matching level: species

strain history

@refhistory
67770D.-C. Yang and Y.-J. Kim DCY63.
67771<- DC Yang, Kyunghee Univ.

doi: 10.13145/bacdive133901.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Weeksellaceae
  • genus: Chryseobacterium
  • species: Chryseobacterium ginsengisoli
  • full scientific name: Chryseobacterium ginsengisoli Nguyen et al. 2013

@ref: 30827

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Chryseobacterium

species: Chryseobacterium ginsengisoli

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
30827negative1.3 µm0.5 µmrod-shapedno
67771rod-shapedno
67771negative

pigmentation

  • @ref: 30827
  • production: yes

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
30827positivegrowth04-37
30827positiveoptimum25mesophilic
67770positivegrowth25mesophilic
67771positivegrowth30mesophilic

culture pH

@refabilitytypepHPH range
30827positivegrowth5.0-8.5alkaliphile
30827positiveoptimum7

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
30827aerobe
67771aerobe

halophily

  • @ref: 30827
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-4 %

observation

@refobservation
30827aggregates in clumps
67771quinones: MK-6

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3082717234glucose+carbon source
3082728087glycogen+carbon source
3082717306maltose+carbon source
3082737684mannose+carbon source
3082726271proline+carbon source
3082726546rhamnose+carbon source
3082717814salicin+carbon source
308274853esculin+hydrolysis

enzymes

@refvalueactivityec
30827acid phosphatase+3.1.3.2
30827alkaline phosphatase+3.1.3.1
30827catalase+1.11.1.6
30827gelatinase+
30827cytochrome oxidase+1.9.3.1
30827urease+3.5.1.5

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitude
30827plant associated
67770Soil recovered from the roots of ginseng cultivated on Sokri MountainChungcheong ProvinceRepublic of KoreaKORAsia
67771From rhizosphere of ginsengSokri Mountain, ChungCheong provinceRepublic of KoreaKORAsia36.5439127.871

isolation source categories

  • Cat1: #Host
  • Cat2: #Plants

Sequence information

16S sequences

  • @ref: 30827
  • description: Chryseobacterium ginsengisoli strain DCY 63 16S ribosomal RNA gene, partial sequence
  • accession: JN852949
  • length: 1438
  • database: nuccore
  • NCBI tax ID: 363853

GC content

  • @ref: 30827
  • GC-content: 31.6

External links

@ref: 30827

culture collection no.: KCTC 23760, JCM 18019, DCY 63

literature

  • topic: Phylogeny
  • Pubmed-ID: 23378110
  • title: Chryseobacterium ginsengisoli sp. nov., isolated from the rhizosphere of ginseng and emended description of Chryseobacterium gleum.
  • authors: Nguyen NL, Kim YJ, Hoang VA, Yang DC
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.045427-0
  • year: 2013
  • mesh: Bacterial Typing Techniques, Base Composition, Chryseobacterium/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Molecular Sequence Data, Nucleic Acid Hybridization, Panax/*microbiology, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, *Rhizosphere, Sequence Analysis, DNA, Soil Microbiology, Vitamin K 2/analogs & derivatives/analysis
  • topic2: Genetics

Reference

@idauthorstitledoi/urlID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
30827Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172715728776041
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc