Strain identifier
BacDive ID: 13389
Type strain: 
Species: Pseudonocardia aurantiaca
Strain Designation: Y-14860
Strain history: AS 4.1537 <-- C. L. Jiang Y-14860.
NCBI tax ID(s): 75290 (species)
version 8.1 (current version)
General
@ref: 12078
BacDive-ID: 13389
DSM-Number: 44773
keywords: 16S sequence, Bacteria, mesophilic
description: Pseudonocardia aurantiaca Y-14860 is a mesophilic bacterium that was isolated from soil sample.
NCBI tax id
- NCBI tax id: 75290
- Matching level: species
strain history
| @ref | history |
|---|---|
| 12078 | <- CGMCC <- C.-L. Jiang; Y-14860 |
| 67770 | AS 4.1537 <-- C. L. Jiang Y-14860. |
doi: 10.13145/bacdive13389.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Pseudonocardiales
- family: Pseudonocardiaceae
- genus: Pseudonocardia
- species: Pseudonocardia aurantiaca
- full scientific name: Pseudonocardia aurantiaca (Xu et al. 1999) Huang et al. 2002
synonyms
- @ref: 20215
- synonym: Actinobispora aurantiaca
@ref: 12078
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Pseudonocardiaceae
genus: Pseudonocardia
species: Pseudonocardia aurantiaca
full scientific name: Pseudonocardia aurantiaca (Xu et al. 1999) Huang et al. 2002
strain designation: Y-14860
type strain: yes
Culture and growth conditions
culture medium
- @ref: 12078
- name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
- growth: yes
- link: https://mediadive.dsmz.de/medium/65
- composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 12078 | positive | growth | 28 | mesophilic |
| 67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: MK-8(H4)
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 12078 | soil sample | Yunnan, Jianchuan | China | CHN | Asia |
| 67770 | Soil | Jianchuan, Yunnan | China | CHN | Asia |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
Safety information
risk assessment
- @ref: 12078
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Actinobispora aurantiaca 16S ribosomal RNA gene, partial sequence | AF056707 | 1556 | ena | 75290 |
| 20218 | Pseudonocardia aurantiaca partial 16S rRNA gene, type strain DSM 44773T | FR749916 | 1500 | ena | 75290 |
| 67770 | Actinobispora aurantiaca 16S ribosomal RNA gene, partial sequence | AF325727 | 1323 | ena | 75290 |
GC content
- @ref: 67770
- GC-content: 71.5
- method: thermal denaturation, midpoint method (Tm)
External links
@ref: 12078
culture collection no.: DSM 44773, AS 4.1537, CCTCC AA 97002, JCM 11838, CGMCC 4.1537
straininfo link
- @ref: 82586
- straininfo: 100471
literature
- topic: Phylogeny
- Pubmed-ID: 10319514
- title: Three new species of the genus Actinobispora of the family Pseudonocardiaceae, Actinobispora alaniniphila sp. nov., Actinobispora aurantiaca sp. nov. and Actinobispora xinjiangensis sp. nov.
- authors: Xu LH, Jin X, Mao PH, Lu ZF, Cui XL, Jiang CL
- journal: Int J Syst Bacteriol
- DOI: 10.1099/00207713-49-2-881
- year: 1999
- mesh: Actinomycetales/*classification/cytology/genetics/physiology, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Genes, rRNA, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Spores, Bacterial/physiology
- topic2: Genetics
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 12078 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 44773) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-44773 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 82586 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID100471.1 | StrainInfo: A central database for resolving microbial strain identifiers |