Strain identifier

BacDive ID: 133887

Type strain: Yes

Species: Bremerella cremea

Strain Designation: LHWP2

Strain history: J.-W. Bae LHWP2.

NCBI tax ID(s): 1031537 (species)

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General

@ref: 30774

BacDive-ID: 133887

keywords: 16S sequence, Bacteria, aerobe, motile, ovoid-shaped

description: Bremerella cremea LHWP2 is an aerobe, motile, ovoid-shaped bacterium that was isolated from dead ark clam.

NCBI tax id

  • NCBI tax id: 1031537
  • Matching level: species

strain history

  • @ref: 67770
  • history: J.-W. Bae LHWP2.

doi: 10.13145/bacdive133887.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/planctomycetota
  • domain: Bacteria
  • phylum: Planctomycetota
  • class: Planctomycetia
  • order: Pirellulales
  • family: Pirellulaceae
  • genus: Bremerella
  • species: Bremerella cremea
  • full scientific name: Bremerella cremea (Lee et al. 2013) Rensink et al. 2021

  • synonyms

    • @ref: 20215
    • synonym: Blastopirellula cremea

@ref: 30774

domain: Bacteria

phylum: Planctomycetes

class: Planctomycea

order: Pirellulales

family: Planctomycetaceae

genus: Blastopirellula

species: Blastopirellula cremea

strain designation: LHWP2

type strain: yes

Morphology

cell morphology

  • @ref: 30774
  • cell length: 1.05 µm
  • cell width: 1 µm
  • cell shape: ovoid-shaped
  • motility: yes

pigmentation

  • @ref: 30774
  • production: yes

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
30774positivegrowth20-37
30774positiveoptimum30mesophilic
67770positivegrowth30mesophilic

culture pH

@refabilitytypepH
30774positivegrowth6.0-8.0
30774positiveoptimum7

Physiology and metabolism

oxygen tolerance

  • @ref: 30774
  • oxygen tolerance: aerobe

halophily

@refsaltgrowthtested relationconcentration
30774NaClpositivegrowth0-10 %
30774NaClpositiveoptimum4 %

observation

  • @ref: 67770
  • observation: quinones: MK-6

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3077430089acetate+carbon source
30774286442-oxopentanoate+carbon source
3077418403L-arabitol+carbon source
3077417057cellobiose+carbon source
3077428757fructose+carbon source
3077433984fucose+carbon source
3077424175galacturonate+carbon source
3077424265gluconate+carbon source
3077417234glucose+carbon source
3077417754glycerol+carbon source
3077424996lactate+carbon source
3077417716lactose+carbon source
3077429864mannitol+carbon source
3077428053melibiose+carbon source
3077437657methyl D-glucoside+carbon source
3077417268myo-inositol+carbon source
3077433942ribose+carbon source
3077417992sucrose+carbon source
3077453423tween 40+carbon source
307744853esculin+hydrolysis

enzymes

@refvalueactivityec
30774acid phosphatase+3.1.3.2
30774alkaline phosphatase+3.1.3.1
30774catalase+1.11.1.6
30774cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typehost species
30774dead ark clam
67770Dead ark clam Scapharca broughtonii from a cage-cultured ark clam farm in Gangjin Bay in the southern coastal region of KoreaScapharca broughtonii

isolation source categories

Cat1Cat2Cat3
#Host#Other#Decomposing animal
#Host#Invertebrates (Other)#Mollusca

taxonmaps

  • @ref: 69479
  • File name: preview.99_11488.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_544;96_5770;97_6944;98_8597;99_11488&stattab=map
  • Last taxonomy: Pirellulaceae
  • 16S sequence: JF748733
  • Sequence Identity:
  • Total samples: 5942
  • soil counts: 786
  • aquatic counts: 4526
  • animal counts: 513
  • plant counts: 117

Sequence information

16S sequences

  • @ref: 30774
  • description: Blastopirellula cremea strain LHWP2 16S ribosomal RNA gene, partial sequence
  • accession: JF748733
  • length: 1430
  • database: nuccore
  • NCBI tax ID: 1031537

GC content

@refGC-contentmethod
3077449.5
6777049.5thermal denaturation, midpoint method (Tm)

External links

@ref: 30774

culture collection no.: KACC 15559, JCM 17758

Reference

@idauthorstitledoi/urlID_cross_referencepubmedjournal
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
30774Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172710528776041
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa102533211880Nucleic Acids Res. 49: D498-D508 2020
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/