Strain identifier

BacDive ID: 133870

Type strain: Yes

Species: Streptomyces ziwulingensis

Strain Designation: F22

Strain history: Y. B. Lin and G.-H. Wei CCNWFX 0001 (=F22).

NCBI tax ID(s): 1045501 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 8.1 (current version)

General

@ref: 64747

BacDive-ID: 133870

DSM-Number: 42130

keywords: 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive, ovoid-shaped

description: Streptomyces ziwulingensis F22 is an aerobe, spore-forming, mesophilic bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 1045501
  • Matching level: species

strain history

@refhistory
64747<- JCM; JCM 18081 <- Y. B. Lin and G. H. Wei; CCNWFX 0001
67770Y. B. Lin and G.-H. Wei CCNWFX 0001 (=F22).

doi: 10.13145/bacdive133870.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces ziwulingensis
  • full scientific name: Streptomyces ziwulingensis Lin et al. 2013

@ref: 64747

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces ziwulingensis

full scientific name: Streptomyces ziwulingensis Lin et al. 2013

strain designation: F22

type strain: yes

Morphology

cell morphology

  • @ref: 30723
  • gram stain: positive
  • cell shape: ovoid-shaped

pigmentation

  • @ref: 30723
  • production: no

multimedia

  • @ref: 64747
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_42130.jpg
  • caption: Medium 65 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
64747GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
64747ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://mediadive.dsmz.de/medium/84Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water
64747STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)yeshttps://mediadive.dsmz.de/medium/252Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 14.985 g/l Starch 9.99001 g/l (NH4)2SO4 1.998 g/l CaCO3 1.998 g/l K2HPO4 0.999001 g/l MgSO4 x 7 H2O 0.999001 g/l NaCl 0.999001 g/l FeSO4 x 7 H2O 0.000999001 g/l MnCl2 x 4 H2O 0.000999001 g/l ZnSO4 x 7 H2O 0.000999001 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
64747positivegrowth28mesophilic
30723positivegrowth20-37
30723positiveoptimum28mesophilic
67770positivegrowth28mesophilic

culture pH

@refabilitytypepHPH range
30723positivegrowth05-09alkaliphile
30723positiveoptimum7.5

Physiology and metabolism

oxygen tolerance

  • @ref: 30723
  • oxygen tolerance: aerobe

spore formation

  • @ref: 30723
  • spore formation: yes

halophily

@refsaltgrowthtested relationconcentration
30723NaClpositivegrowth0-4 %
30723NaClpositiveoptimum1 %

observation

@refobservation
30723aggregates in chains
67770quinones: MK- 9(H8), MK-9(H6), MK-9(H2), MK-9(H4)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3072322599arabinose+carbon source
3072328260galactose+carbon source
3072317234glucose+carbon source
3072317716lactose+carbon source
3072317306maltose+carbon source
3072326546rhamnose+carbon source
3072317992sucrose+carbon source

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
30723soil
64747grassland soilLoess Plateau, Ziwuling areaChinaCHNAsia
67770Grassland soil in the Ziwuling area on the Loess PlateauChinaCHNAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

  • @ref: 64747
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 64747
  • description: Streptomyces ziwulingensis strain F22 16S ribosomal RNA gene, partial sequence
  • accession: JF957700
  • length: 1394
  • database: ena
  • NCBI tax ID: 1045501

GC content

@refGC-contentmethod
6474771.8
6777071.8thermal denaturation, midpoint method (Tm)

External links

@ref: 64747

culture collection no.: CCNWFX 0001, JCM 18081, ACCC 41875, DSM 42130

straininfo link

  • @ref: 91622
  • straininfo: 404024

literature

  • topic: Phylogeny
  • Pubmed-ID: 22888189
  • title: Streptomyces ziwulingensis sp. nov., isolated from grassland soil.
  • authors: Lin YB, Wang XY, Wang TT, An SS, Shi P, Wei GH
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.043026-0
  • year: 2012
  • mesh: Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, Poaceae, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/isolation & purification, Vitamin K 2/analysis
  • topic2: Genetics

Reference

@idauthorstitledoi/urlID_cross_referencepubmedcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
30723Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172705428776041
64747Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-42130Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 42130)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
91622Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID404024.1