Strain identifier

BacDive ID: 13385

Type strain: Yes

Species: Pseudonocardia xinjiangensis

Strain Designation: XJ 45

Strain history: AS 4.1538 <-- C. L. Jiang XJ-45.

NCBI tax ID(s): 75289 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 11857

BacDive-ID: 13385

DSM-Number: 44661

keywords: Bacteria, 16S sequence, genome sequence, mesophilic

description: Pseudonocardia xinjiangensis XJ 45 is a mesophilic bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 75289
  • Matching level: species

strain history

doi: 10.13145/bacdive13385.20220920.7

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Pseudonocardiales
  • family: Pseudonocardiaceae
  • genus: Pseudonocardia
  • species: Pseudonocardia xinjiangensis
  • full scientific name: Pseudonocardia xinjiangensis (Xu et al. 1999) Huang et al. 2002
  • synonyms

    • @ref: 20215
    • synonym: Actinobispora xinjiangensis

@ref: 11857

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Pseudonocardiaceae

genus: Pseudonocardia

species: Pseudonocardia xinjiangensis

full scientific name: Pseudonocardia xinjiangensis (Xu et al. 1999) Huang et al. 2002

strain designation: XJ 45

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
11857GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://bacmedia.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 12.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
33776MEDIUM 57 - for Streptomyces, Nocardioides, Lentzea albidocapillata and Streptoverticillium reticulumyesDistilled water make up to (1000.000 ml);Agar (15.000 g);Glucose (4.000g);Yeast extract (4.000 g);Malt extract (10.000 g);Calcium carbonate (2.000 g)

culture temp

@refgrowthtypetemperaturerange
11857positivegrowth28mesophilic
33776positivegrowth30mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

observation

  • @ref: 67770
  • observation: quinones: MK-8(H4)

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
11857soilXinjiang, Tolufan, grapy farmlandChinaCHNAsia
67770SoilTolufan, XinjiangChinaCHNAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

  • @ref: 11857
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
67770Actinobispora xinjiangensis 16S ribosomal RNA gene, partial sequenceAF0567091563ena75289
67770Actinobispora xinjiangensis 16S ribosomal RNA gene, partial sequenceAF3257281325ena75289
67770Pseudonocardia xinjiangensis strain XJ 45 16S ribosomal RNA gene, partial sequenceEU7225201516ena75289

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Pseudonocardia xinjiangensis JCM 11839GCA_012911925contigncbi75289
66792Pseudonocardia xinjiangensis strain JCM 1183975289.3wgspatric75289
67770Pseudonocardia xinjiangensis strain JCM 11839, whole genome shotgun sequencing projectJAAXKY000000000ncbi75289

GC content

  • @ref: 67770
  • GC-content: 71.5
  • method: thermal denaturation, midpoint method (Tm)

External links

@ref: 11857

culture collection no.: DSM 44661, AS 4.1538, CCTCC AA 97020, CIP 107366, JCM 11839, BCRC 16358, CGMCC 4.1538, NBRC 105201

straininfo link

@refpassport
20218http://www.straininfo.net/strains/303586
20218http://www.straininfo.net/strains/337470
20218http://www.straininfo.net/strains/301734
20218http://www.straininfo.net/strains/340804
20218http://www.straininfo.net/strains/337469

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny10319514Three new species of the genus Actinobispora of the family Pseudonocardiaceae, Actinobispora alaniniphila sp. nov., Actinobispora aurantiaca sp. nov. and Actinobispora xinjiangensis sp. nov.Xu LH, Jin X, Mao PH, Lu ZF, Cui XL, Jiang CLInt J Syst Bacteriol10.1099/00207713-49-2-8811999Actinomycetales/*classification/cytology/genetics/physiology, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Genes, rRNA, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Spores, Bacterial/physiologyGenetics
Phylogeny28820114Pseudonocardia nigra sp. nov., isolated from Atacama Desert rock.Trujillo ME, Idris H, Riesco R, Nouioui I, Igual JM, Bull AT, Goodfellow MInt J Syst Evol Microbiol10.1099/ijsem.0.0020632017Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, Chile, DNA, Bacterial/genetics, *Desert Climate, Fatty Acids/chemistry, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNATranscriptome
Phylogeny32931406Pseudonocardia acidicola sp. nov., a novel actinomycete isolated from peat swamp forest soil.Klaysubun C, Lipun K, Duangmal KInt J Syst Evol Microbiol10.1099/ijsem.0.0044592020Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Pseudonocardia/*classification/isolation & purification, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Thailand, Vitamin K 2/analogs & derivatives/chemistry, *WetlandsTranscriptome

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
11857Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 44661)https://www.dsmz.de/collection/catalogue/details/culture/DSM-44661
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
33776Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/4793
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/