Strain identifier

BacDive ID: 133837

Type strain: Yes

Species: Bizionia hallyeonensis

Strain Designation: T-y7

Strain history: <- JH Yoon, Sungkyunkwan Univ.

NCBI tax ID(s): 1123757 (species)

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General

@ref: 30633

BacDive-ID: 133837

keywords: 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped

description: Bizionia hallyeonensis T-y7 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from seawater.

NCBI tax id

  • NCBI tax id: 1123757
  • Matching level: species

strain history

  • @ref: 67771
  • history: <- JH Yoon, Sungkyunkwan Univ.

doi: 10.13145/bacdive133837.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Bizionia
  • species: Bizionia hallyeonensis
  • full scientific name: Bizionia hallyeonensis Yoon et al. 2013

  • synonyms

    • @ref: 20215
    • synonym: Algorimicrobium hallyeonense

@ref: 30633

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Bizionia

species: Bizionia hallyeonensis

strain designation: T-y7

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
30633negative2.65 µm0.4 µmrod-shapedno
67771rod-shapedno
67771negative

colony morphology

  • @ref: 62783
  • incubation period: 4-5 days

pigmentation

  • @ref: 30633
  • production: yes

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
30633positivegrowth04-35
30633positiveoptimum25mesophilic
62783positivegrowth30mesophilic
67771positivegrowth25mesophilic

culture pH

@refabilitytypepH
30633positivegrowth5.5-8
30633positiveoptimum7

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
30633aerobe
62783aerobe
67771aerobe

spore formation

  • @ref: 30633
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
30633NaClpositivegrowth0-9 %
30633NaClpositiveoptimum2 %

observation

  • @ref: 67771
  • observation: quinones: MK-6

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3063353424tween 20+carbon source
3063353423tween 40+carbon source
3063353425tween 60+carbon source
3063353426tween 80+carbon source

enzymes

@refvalueactivityec
30633acid phosphatase+3.1.3.2
30633alkaline phosphatase+3.1.3.1
30633catalase+1.11.1.6
30633gelatinase+
30633cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typesampling dategeographic locationcountryorigin.countrycontinent
30633seawater
62783Seawater,oyster farm2008South Sea,TongyoungRepublic of KoreaKORAsia
67771From sea waterSouth SeaRepublic of KoreaKORAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Marine

taxonmaps

  • @ref: 69479
  • File name: preview.99_7030.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_107;96_2813;97_3454;98_5165;99_7030&stattab=map
  • Last taxonomy: Bizionia
  • 16S sequence: JN885199
  • Sequence Identity:
  • Total samples: 760
  • soil counts: 12
  • aquatic counts: 616
  • animal counts: 125
  • plant counts: 7

Sequence information

16S sequences

  • @ref: 30633
  • description: Bizionia hallyeonensis strain T-y7 16S ribosomal RNA gene, partial sequence
  • accession: JN885199
  • length: 1448
  • database: nuccore
  • NCBI tax ID: 1123757

GC content

@refGC-contentmethod
3063337.1
6777137.1high performance liquid chromatography (HPLC)

External links

@ref: 30633

culture collection no.: KCTC 23881, CCUG 62110

straininfo link

  • @ref: 91614
  • straininfo: 410281

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny22544796Bizionia hallyeonensis sp. nov., isolated from seawater in an oyster farm.Yoon JH, Kang CH, Jung YT, Kang SJInt J Syst Evol Microbiol10.1099/ijs.0.040741-02012Animals, Bacterial Typing Techniques, Base Composition, DNA, Ribosomal/genetics, Fatty Acids/analysis, Flavobacteriaceae/*classification/genetics/isolation & purification, Molecular Sequence Data, *Ostreidae, Phosphatidylethanolamines/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/analysisGenetics
Phylogeny25103949Bizionia psychrotolerans sp. nov., a psychrophilic bacterium isolated from the intestine of a sea cucumber (Apostichopus japonicus).Song EJ, Lee MH, Seo MJ, Yim KJ, Hyun DW, Bae JW, Park SL, Roh SW, Nam YDAntonie Van Leeuwenhoek10.1007/s10482-014-0253-x2014Animals, Bacterial Typing Techniques, Base Composition, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Flavobacteriaceae/*classification/genetics/*isolation & purification/physiology, Hydrogen-Ion Concentration, Intestines/microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sea Cucumbers/*microbiology, Sequence Analysis, DNA, Sodium Chloride/metabolism, Temperature, Vitamin K 2/analysisGenetics
Phylogeny25351879Hanstruepera neustonica gen. nov., sp. nov., a zeaxanthin-producing member of the family Flavobacteriaceae isolated from estuarine water, and emendation of Sediminibacter furfurosus Khan et al. 2007 emend. Kwon et al. 2014, Mangrovimonas yunxiaonensis Li et al. 2013, Antarcticimonas flava Yang et al. 2009 and Hoppeia youngheungensis Kwon et al. 2014.Hameed A, Shahina M, Lai WA, Lin SY, Liu YC, Hsu YH, Young CCInt J Syst Evol Microbiol10.1099/ijs.0.066852-02014Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Estuaries, Fatty Acids/chemistry, Flavobacteriaceae/*classification/genetics/isolation & purification, Molecular Sequence Data, Phosphatidylethanolamines/chemistry, Phospholipids/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Taiwan, Vitamin K 2/analogs & derivatives/chemistry, Zeaxanthins/*biosynthesisGenetics
Phylogeny25604342Ichthyenterobacterium magnum gen. nov., sp. nov., a member of the family Flavobacteriaceae isolated from olive flounder (Paralichthys olivaceus).Shakeela Q, Shehzad A, Tang K, Zhang Y, Zhang XHInt J Syst Evol Microbiol10.1099/ijs.0.0000782015Animals, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/genetics/isolation & purification, Flounder/*microbiology, Intestines/microbiology, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryGenetics

Reference

@idauthorstitledoi/urlID_cross_referencepubmedcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
30633Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172696428776041
62783Curators of the CCUGhttps://www.ccug.se/strain?id=62110Culture Collection University of Gothenburg (CCUG) (CCUG 62110)
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
91614Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID410281.1