Strain identifier
BacDive ID: 133828
Type strain: 
Species: Chryseobacterium taihuense
Strain Designation: THMBM1
NCBI tax ID(s): 1141221 (species)
version 8.1 (current version)
General
@ref: 30620
BacDive-ID: 133828
keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, Gram-negative, rod-shaped
description: Chryseobacterium taihuense THMBM1 is a facultative anaerobe, Gram-negative, rod-shaped bacterium that was isolated from decomposing algal scum.
NCBI tax id
- NCBI tax id: 1141221
- Matching level: species
doi: 10.13145/bacdive133828.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Flavobacteriia
- order: Flavobacteriales
- family: Weeksellaceae
- genus: Chryseobacterium
- species: Chryseobacterium taihuense
- full scientific name: Chryseobacterium taihuense Wu et al. 2013
@ref: 30620
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Flavobacteriaceae
genus: Chryseobacterium
species: Chryseobacterium taihuense
strain designation: THMBM1
type strain: yes
Morphology
cell morphology
- @ref: 30620
- gram stain: negative
- cell length: 1.5 µm
- cell width: 0.5 µm
- cell shape: rod-shaped
- motility: no
pigmentation
- @ref: 30620
- production: yes
Culture and growth conditions
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 30620 | positive | growth | 15-45 | |
| 30620 | positive | optimum | 33.5 | mesophilic |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 30620 | positive | growth | 05-09 | alkaliphile |
| 30620 | positive | optimum | 8 |
Physiology and metabolism
oxygen tolerance
- @ref: 30620
- oxygen tolerance: facultative anaerobe
spore formation
- @ref: 30620
- spore formation: no
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 30620 | NaCl | positive | growth | 0-4 % |
| 30620 | NaCl | positive | optimum | 0.5 % |
observation
- @ref: 30620
- observation: aggregates in clumps
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 30620 | 27689 | decanoate | + | carbon source |
| 30620 | 24265 | gluconate | + | carbon source |
| 30620 | 17234 | glucose | + | carbon source |
| 30620 | 25115 | malate | + | carbon source |
| 30620 | 17306 | maltose | + | carbon source |
| 30620 | 29864 | mannitol | + | carbon source |
| 30620 | 37684 | mannose | + | carbon source |
| 30620 | 4853 | esculin | + | hydrolysis |
metabolite production
- @ref: 30620
- Chebi-ID: 35581
- metabolite: indole
- production: yes
metabolite tests
- @ref: 30620
- Chebi-ID: 35581
- metabolite: indole
- indole test: +
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 30620 | acid phosphatase | + | 3.1.3.2 |
| 30620 | alkaline phosphatase | + | 3.1.3.1 |
| 30620 | catalase | + | 1.11.1.6 |
| 30620 | gelatinase | + | |
| 30620 | cytochrome oxidase | + | 1.9.3.1 |
| 30620 | urease | + | 3.5.1.5 |
Isolation, sampling and environmental information
isolation
- @ref: 30620
- sample type: decomposing algal scum
isolation source categories
- Cat1: #Host
- Cat2: #Algae
Sequence information
16S sequences
- @ref: 30620
- description: Chryseobacterium taihuense strain THMBM1 16S ribosomal RNA gene, partial sequence
- accession: JQ283114
- length: 1478
- database: nuccore
- NCBI tax ID: 1141221
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Chryseobacterium taihuense CGMCC 1.10941 | GCA_900103755 | scaffold | ncbi | 1141221 |
| 66792 | Chryseobacterium taihuense strain CGMCC 1.10941 | 1141221.4 | wgs | patric | 1141221 |
| 66792 | Chryseobacterium taihuense CGMCC 1.10941 | 2663762742 | draft | img | 1141221 |
GC content
- @ref: 30620
- GC-content: 36.8
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 91.592 | no |
| flagellated | no | 96.314 | no |
| gram-positive | no | 98.434 | yes |
| anaerobic | no | 99.139 | yes |
| aerobic | yes | 86.908 | yes |
| halophile | no | 93.338 | no |
| spore-forming | no | 94.956 | yes |
| glucose-ferment | no | 93.292 | no |
| thermophile | no | 98.941 | yes |
| glucose-util | yes | 84.971 | yes |
External links
@ref: 30620
culture collection no.: CGMCC 1.10941, NBRC 108747
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 22634705 | Chryseobacterium taihuense sp. nov., isolated from a eutrophic lake, and emended descriptions of the genus Chryseobacterium, Chryseobacterium taiwanense, Chryseobacterium jejuense and Chryseobacterium indoltheticum. | Wu YF, Wu QL, Liu SJ | Int J Syst Evol Microbiol | 10.1099/ijs.0.040337-0 | 2012 | Bacterial Typing Techniques, Base Composition, China, Chryseobacterium/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Eutrophication, Fatty Acids/analysis, Lakes/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phosphatidylethanolamines/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Spermidine/analogs & derivatives/analysis, Vitamin K 2/analogs & derivatives/analysis, Water Microbiology | Genetics |
| Phylogeny | 26286270 | Chryseobacterium echinoideorum sp. nov., isolated from sea urchins (Tripneustes gratilla). | Lin SY, Hameed A, Wen CZ, Liu YC, Shen FT, Hsu YH, Lai WA, Young CC | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000524 | 2015 | Animals, Bacterial Typing Techniques, Base Composition, Chryseobacterium/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Phosphatidylethanolamines/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sea Urchins/*microbiology, Sequence Analysis, DNA, Spermidine/analogs & derivatives/chemistry, Taiwan, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
| Phylogeny | 27902240 | Chryseobacterium lineare sp. nov., isolated from a limpid stream. | Zhao Z, Tu YQ, Shen X, Han SB, Zhang CY, Sun C, Wu M | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001629 | 2017 | Bacterial Typing Techniques, Base Composition, China, Chryseobacterium/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Glycolipids/chemistry, Nucleic Acid Hybridization, Phosphatidylethanolamines/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rivers/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
| Phylogeny | 36201336 | Chryseobacterium oryzae sp. nov. and Chryseobacterium suipulveris sp. nov., isolated from Andong sikhye and pigpen dust, respectively. | Heo J, Won M, Lee D, Kim JS, Han BH, Kim SJ, Hong SB, Kwon SW | Int J Syst Evol Microbiol | 10.1099/ijsem.0.005532 | 2022 | Bacterial Typing Techniques, Base Composition, *Chryseobacterium, DNA, Bacterial/genetics, Dust, Fatty Acids/chemistry, Nucleotides, Phosphatidylethanolamines, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2 | Transcriptome |
Reference
| @id | authors | title | doi/url | ID_cross_reference | pubmed |
|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
| 30620 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 26951 | 28776041 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |