Strain identifier

BacDive ID: 133820

Type strain: Yes

Species: Halomonas ramblicola

Strain Designation: RS-16

NCBI tax ID(s): 747349 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 8.1 (current version)

General

@ref: 30594

BacDive-ID: 133820

keywords: 16S sequence, Bacteria, aerobe, Gram-negative, motile, rod-shaped

description: Halomonas ramblicola RS-16 is an aerobe, Gram-negative, motile bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 747349
  • Matching level: species

doi: 10.13145/bacdive133820.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Oceanospirillales
  • family: Halomonadaceae
  • genus: Halomonas
  • species: Halomonas ramblicola
  • full scientific name: Halomonas ramblicola Luque et al. 2012

@ref: 30594

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Oceanospirillales

family: Halomonadaceae

genus: Halomonas

species: Halomonas ramblicola

strain designation: RS-16

type strain: yes

Morphology

cell morphology

  • @ref: 30594
  • gram stain: negative
  • cell length: 2.45 µm
  • cell width: 1.25 µm
  • cell shape: rod-shaped
  • motility: yes

pigmentation

  • @ref: 30594
  • production: yes

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
30594positivegrowth04-41
30594positiveoptimum34.5mesophilic

culture pH

@refabilitytypepHPH range
30594positivegrowth05-10alkaliphile
30594positiveoptimum7

Physiology and metabolism

oxygen tolerance

  • @ref: 30594
  • oxygen tolerance: aerobe

halophily

@refsaltgrowthtested relationconcentration
30594NaClpositivegrowth01-30 %
30594NaClpositiveoptimum6.25 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3059430089acetate+carbon source
3059435391aspartate+carbon source
3059417057cellobiose+carbon source
3059416947citrate+carbon source
3059428260galactose+carbon source
3059424265gluconate+carbon source
3059417234glucose+carbon source
3059429987glutamate+carbon source
3059417754glycerol+carbon source
3059425017leucine+carbon source
3059415792malonate+carbon source
3059428053melibiose+carbon source
3059417268myo-inositol+carbon source
3059417272propionate+carbon source
3059415361pyruvate+carbon source
3059426546rhamnose+carbon source
3059430911sorbitol+carbon source
3059430031succinate+carbon source
3059427082trehalose+carbon source
3059417632nitrate+reduction

enzymes

@refvalueactivityec
30594catalase+1.11.1.6
30594gelatinase+

Isolation, sampling and environmental information

isolation

  • @ref: 30594
  • sample type: soil

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_118310.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_48;96_430;97_35449;98_79828;99_118310&stattab=map
  • Last taxonomy: Halomonas
  • 16S sequence: GU726750
  • Sequence Identity:
  • Total samples: 43
  • soil counts: 9
  • aquatic counts: 15
  • animal counts: 19

Sequence information

16S sequences

  • @ref: 30594
  • description: Halomonas ramblicola strain RS-16 16S ribosomal RNA gene, partial sequence
  • accession: GU726750
  • length: 1428
  • database: nuccore
  • NCBI tax ID: 747349

GC content

  • @ref: 30594
  • GC-content: 56.2

External links

@ref: 30594

culture collection no.: CECT 7896, LMG 26647

straininfo link

  • @ref: 91606
  • straininfo: 377973

literature

  • topic: Phylogeny
  • Pubmed-ID: 22247215
  • title: Halomonas ramblicola sp. nov., a moderately halophilic bacterium from Rambla Salada, a Mediterranean hypersaline rambla.
  • authors: Luque R, Bejar V, Quesada E, Martinez-Checa F, Llamas I
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.039453-0
  • year: 2012
  • mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Halomonas/*classification/genetics/isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Salinity, Sequence Analysis, DNA, *Soil Microbiology, Spain, Ubiquinone/analysis
  • topic2: Genetics

Reference

@idauthorstitledoi/urlID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
30594Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172692528776041
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
91606Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID377973.1