Strain identifier
BacDive ID: 133797
Type strain: 
Species: Mucilaginibacter herbaticus
Strain Designation: DR-9
NCBI tax ID(s): 1097322 (species)
version 8.1 (current version)
General
@ref: 30544
BacDive-ID: 133797
keywords: 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped
description: Mucilaginibacter herbaticus DR-9 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from plant associated.
NCBI tax id
- NCBI tax id: 1097322
- Matching level: species
doi: 10.13145/bacdive133797.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Sphingobacteriia
- order: Sphingobacteriales
- family: Sphingobacteriaceae
- genus: Mucilaginibacter
- species: Mucilaginibacter herbaticus
- full scientific name: Mucilaginibacter herbaticus Lee et al. 2013
@ref: 30544
domain: Bacteria
phylum: Bacteroidetes
class: Sphingobacteriia
order: Sphingobacteriales
family: Sphingobacteriaceae
genus: Mucilaginibacter
species: Mucilaginibacter herbaticus
strain designation: DR-9
type strain: yes
Morphology
cell morphology
- @ref: 30544
- gram stain: negative
- cell length: 1.75 µm
- cell width: 0.5 µm
- cell shape: rod-shaped
- motility: no
pigmentation
- @ref: 30544
- production: yes
Culture and growth conditions
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 30544 | positive | growth | 20-40 | |
| 30544 | positive | optimum | 25 | mesophilic |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 30544 | positive | growth | 04-09 | alkaliphile |
| 30544 | positive | optimum | 7 |
Physiology and metabolism
oxygen tolerance
- @ref: 30544
- oxygen tolerance: aerobe
spore formation
- @ref: 30544
- spore formation: no
halophily
- @ref: 30544
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: 0-1 %
observation
- @ref: 30544
- observation: aggregates in clumps
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 30544 | 17234 | glucose | + | carbon source |
| 30544 | 29864 | mannitol | + | carbon source |
| 30544 | 37684 | mannose | + | carbon source |
| 30544 | 18401 | phenylacetate | + | carbon source |
| 30544 | 17632 | nitrate | + | reduction |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 30544 | acid phosphatase | + | 3.1.3.2 |
| 30544 | alkaline phosphatase | + | 3.1.3.1 |
| 30544 | alpha-galactosidase | + | 3.2.1.22 |
| 30544 | catalase | + | 1.11.1.6 |
| 30544 | cytochrome oxidase | + | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
- @ref: 30544
- sample type: plant associated
isolation source categories
- Cat1: #Host
- Cat2: #Plants
taxonmaps
- @ref: 69479
- File name: preview.99_61159.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_115;96_14359;97_33756;98_43417;99_61159&stattab=map
- Last taxonomy: Mucilaginibacter herbaticus subclade
- 16S sequence: JN695632
- Sequence Identity:
- Total samples: 142
- soil counts: 87
- aquatic counts: 22
- animal counts: 8
- plant counts: 25
Sequence information
16S sequences
- @ref: 30544
- description: Mucilaginibacter herbaticus strain DR-9 16S ribosomal RNA gene, partial sequence
- accession: JN695632
- length: 1447
- database: nuccore
- NCBI tax ID: 1097322
GC content
- @ref: 30544
- GC-content: 49.8
External links
@ref: 30544
culture collection no.: KACC 16469, NBRC 108839
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 23291898 | Mucilaginibacter herbaticus sp. nov., isolated from the rhizosphere of the medicinal plant Angelica sinensis. | Lee HR, Han SI, Rhee KH, Whang KS | Int J Syst Evol Microbiol | 10.1099/ijs.0.038398-0 | 2013 | Angelica sinensis/*microbiology, Bacterial Typing Techniques, Bacteroidetes/*classification/genetics/isolation & purification, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, Plants, Medicinal/microbiology, RNA, Ribosomal, 16S/genetics, Republic of Korea, *Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Sphingolipids/analysis, Vitamin K 2/analogs & derivatives/analysis | Genetics |
| Phylogeny | 26827674 | Mucilaginibacter yixingensis sp. nov., isolated from vegetable soil. | Jing YT, Wang P, Zhang H, Dong WL, Jing YJ, Xiao YL, Cao H | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000941 | 2016 | *Agriculture, Bacterial Typing Techniques, Bacteroidetes/*classification/genetics/isolation & purification, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
Reference
| @id | authors | title | doi/url | ID_cross_reference | pubmed |
|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
| 30544 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 26875 | 28776041 |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |