Strain identifier
BacDive ID: 133793
Type strain: 
Species: Kerstersia similis
Strain history: CIP <- 2019, CCUG <- 2002, LMG <- 1984, D. Monget, Api, France: strain Api 145-2-84 <- 1983, G. Gilardi, CDC, Altanta, Georgia, USA
NCBI tax ID(s): 206505 (species)
version 8.1 (current version)
General
@ref: 30519
BacDive-ID: 133793
keywords: Bacteria, aerobe, Gram-negative, ovoid-shaped
description: Kerstersia similis CCUG 46999 is an aerobe, Gram-negative, ovoid-shaped bacterium that was isolated from Human - neck abscess.
NCBI tax id
- NCBI tax id: 206505
- Matching level: species
strain history
- @ref: 122616
- history: CIP <- 2019, CCUG <- 2002, LMG <- 1984, D. Monget, Api, France: strain Api 145-2-84 <- 1983, G. Gilardi, CDC, Altanta, Georgia, USA
doi: 10.13145/bacdive133793.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Burkholderiales
- family: Alcaligenaceae
- genus: Kerstersia
- species: Kerstersia similis
- full scientific name: Kerstersia similis Vandamme et al. 2012
@ref: 30519
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Burkholderiales
family: Alcaligenaceae
genus: Kerstersia
species: Kerstersia similis
type strain: yes
Morphology
cell morphology
| @ref | gram stain | cell length | cell width | cell shape | motility |
|---|---|---|---|---|---|
| 30519 | negative | 1.07 µm | 0.4 µm | ovoid-shaped | no |
| 122616 | negative | rod-shaped | no |
pigmentation
- @ref: 30519
- production: yes
Culture and growth conditions
culture medium
- @ref: 122616
- name: CIP Medium 72
- growth: yes
- link: https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 30519 | positive | growth | 28-42 | |
| 57445 | positive | growth | 30-37 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 57445
- oxygen tolerance: aerobe
halophily
- @ref: 30519
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: 0-4.5 %
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 30519 | 16193 | 3-hydroxybenzoate | + | carbon source |
| 30519 | 37054 | 3-hydroxybutyrate | + | carbon source |
| 30519 | 30089 | acetate | + | carbon source |
| 30519 | 16449 | alanine | + | carbon source |
| 30519 | 35391 | aspartate | + | carbon source |
| 30519 | 27689 | decanoate | + | carbon source |
| 30519 | 16947 | citrate | + | carbon source |
| 30519 | 29987 | glutamate | + | carbon source |
| 30519 | 24996 | lactate | + | carbon source |
| 30519 | 25115 | malate | + | carbon source |
| 30519 | 18257 | ornithine | + | carbon source |
| 30519 | 18401 | phenylacetate | + | carbon source |
| 30519 | 28044 | phenylalanine | + | carbon source |
| 30519 | 26271 | proline | + | carbon source |
| 30519 | 17272 | propionate | + | carbon source |
| 30519 | 15361 | pyruvate | + | carbon source |
| 30519 | 30031 | succinate | + | carbon source |
| 30519 | 16296 | D-tryptophan | + | carbon source |
| 30519 | 31011 | valerate | + | carbon source |
enzymes
- @ref: 30519
- value: catalase
- activity: +
- ec: 1.11.1.6
Isolation, sampling and environmental information
isolation
| @ref | sample type | sampling date | country | origin.country | continent | isolation date |
|---|---|---|---|---|---|---|
| 30519 | Human - neck abscess | |||||
| 57445 | Human wound,leg | 1983 | USA | USA | North America | |
| 122616 | Human, Wound leg | United States of America | USA | North America | 1983-01-03 |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Human | |
| #Host Body-Site | #Other | #Abscess |
Safety information
risk assessment
- @ref: 122616
- biosafety level: 1
- biosafety level comment: Risk group (French classification)
Sequence information
GC content
- @ref: 30519
- GC-content: 61.5
External links
@ref: 30519
culture collection no.: CCUG 46999, LMG 5890, CIP 111651, Api 145-2-84
straininfo link
- @ref: 91597
- straininfo: 769
literature
- topic: Phylogeny
- Pubmed-ID: 22058318
- title: Kerstersia similis sp. nov., isolated from human clinical samples.
- authors: Vandamme P, De Brandt E, Houf K, De Baere T
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.037887-0
- year: 2011
- mesh: Alcaligenaceae/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Belgium, DNA Fingerprinting, DNA, Bacterial/genetics, Genes, Bacterial, Humans, Male, Middle Aged, Molecular Sequence Data, *Phylogeny, Sequence Analysis, DNA, United States
- topic2: Pathogenicity
Reference
| @id | authors | title | doi/url | ID_cross_reference | pubmed | catalogue |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 30519 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 26851 | 28776041 | |
| 57445 | Curators of the CCUG | https://www.ccug.se/strain?id=46999 | Culture Collection University of Gothenburg (CCUG) (CCUG 46999) | |||
| 91597 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID769.1 | |||
| 122616 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20111651 | Collection of Institut Pasteur (CIP 111651) |