Strain identifier

BacDive ID: 133791

Type strain: Yes

Species: Aestuariibaculum suncheonense

Strain history: C. O. Jeon SC17.

NCBI tax ID(s): 1028745 (species)

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General

@ref: 30515

BacDive-ID: 133791

keywords: 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped

description: Aestuariibaculum suncheonense KACC 16186 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from marine sediment.

NCBI tax id

  • NCBI tax id: 1028745
  • Matching level: species

strain history

  • @ref: 67770
  • history: C. O. Jeon SC17.

doi: 10.13145/bacdive133791.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Aestuariibaculum
  • species: Aestuariibaculum suncheonense
  • full scientific name: Aestuariibaculum suncheonense Jeong et al. 2013

@ref: 30515

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Aestuariibaculum

species: Aestuariibaculum suncheonense

type strain: yes

Morphology

cell morphology

  • @ref: 30515
  • gram stain: negative
  • cell length: 2.5 µm
  • cell width: 0.6 µm
  • cell shape: rod-shaped
  • motility: no

pigmentation

  • @ref: 30515
  • production: yes

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
30515positivegrowth05-40
30515positiveoptimum27.5mesophilic
67770positivegrowth30mesophilic

culture pH

@refabilitytypepHPH range
30515positivegrowth6-8.5alkaliphile
30515positiveoptimum7

Physiology and metabolism

oxygen tolerance

  • @ref: 30515
  • oxygen tolerance: aerobe

halophily

@refsaltgrowthtested relationconcentration
30515NaClpositivegrowth01-08 %
30515NaClpositiveoptimum1.5 %

observation

  • @ref: 67770
  • observation: quinones: MK-6

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3051530089acetate+carbon source
3051521217L-alaninamide+carbon source
3051516449alanine+carbon source
3051540585alpha-cyclodextrin+carbon source
3051522599arabinose+carbon source
3051522653asparagine+carbon source
3051535391aspartate+carbon source
3051523652dextrin+carbon source
3051528757fructose+carbon source
3051528260galactose+carbon source
3051517234glucose+carbon source
3051529987glutamate+carbon source
3051527570histidine+carbon source
30515182404-hydroxy-L-proline+carbon source
3051524996lactate+carbon source
3051517716lactose+carbon source
3051517306maltose+carbon source
3051537684mannose+carbon source
3051528053melibiose+carbon source
30515506227N-acetylglucosamine+carbon source
3051518257ornithine+carbon source
3051528044phenylalanine+carbon source
3051526271proline+carbon source
3051516634raffinose+carbon source
3051517822serine+carbon source
3051517992sucrose+carbon source
3051526986threonine+carbon source
3051553424tween 20+carbon source
3051516704uridine+carbon source
3051527248urocanic acid+carbon source
305154853esculin+hydrolysis
3051517632nitrate+reduction

metabolite production

  • @ref: 30515
  • Chebi-ID: 35581
  • metabolite: indole
  • production: yes

metabolite tests

  • @ref: 30515
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: +

enzymes

@refvalueactivityec
30515acid phosphatase+3.1.3.2
30515alkaline phosphatase+3.1.3.1
30515alpha-galactosidase+3.2.1.22
30515catalase+1.11.1.6
30515gelatinase+
30515cytochrome oxidase+1.9.3.1
30515urease+3.5.1.5

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
30515marine sediment
67770Sediment of a tidal flat in the Suncheon bayRepublic of KoreaKORAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Aquatic#Sediment

Sequence information

16S sequences

  • @ref: 30515
  • description: Aestuariibaculum suncheonense strain SC17 16S ribosomal RNA gene, partial sequence
  • accession: JF751043
  • length: 1482
  • database: nuccore
  • NCBI tax ID: 1028745

GC content

@refGC-contentmethod
3051546.4
6777046.4thermal denaturation, midpoint method (Tm)

External links

@ref: 30515

culture collection no.: KACC 16186, JCM 17789, SC 17

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny22427453Aestuariibaculum suncheonense gen. nov., sp. nov., a marine bacterium of the family Flavobacteriaceae isolated from a tidal flat and emended descriptions of the genera Gaetbulibacter and Tamlana.Jeong SH, Park MS, Jin HM, Lee K, Park W, Jeon COInt J Syst Evol Microbiol10.1099/ijs.0.037846-02012Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Flavobacteriaceae/*classification/genetics/isolation & purification, Geologic Sediments/*microbiology, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/analysisGenetics
Phylogeny24048868Aquibacter zeaxanthinifaciens gen. nov., sp. nov., a zeaxanthin-producing bacterium of the family Flavobacteriaceae isolated from surface seawater, and emended descriptions of the genera Aestuariibaculum and Gaetbulibacter.Hameed A, Shahina M, Lin SY, Lai WA, Hsu YH, Liu YC, Young CCInt J Syst Evol Microbiol10.1099/ijs.0.052621-02013Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/genetics/isolation & purification, Molecular Sequence Data, Phosphatidylethanolamines/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Spermidine/analogs & derivatives/chemistry, Taiwan, Vitamin K 2/analogs & derivatives/chemistry, Xanthophylls/*biosynthesis, ZeaxanthinsGenetics
Phylogeny24385349Aestuariibaculum scopimerae sp. nov., isolated from the globular ghost crab, Scopimera globosa.Lee JB, Kim BC, Kim H, Bae KS, Yang JH, Chun YY, Park SJ, Park DSJ Microbiol10.1007/s12275-013-3499-52013Animals, Base Composition, Brachyura/*microbiology, DNA, Bacterial/genetics, Fatty Acids/metabolism, Flavobacteriaceae/*classification/genetics/*isolation & purification/metabolism, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/geneticsMetabolism
Phylogeny30141155Aestuariibaculum marinum sp. nov., a marine bacterium isolated from seawater in South Korea.Choi J, Lee D, Jang JH, Cha S, Seo TJ Microbiol10.1007/s12275-018-8134-z2018Bacterial Typing Techniques, Base Composition, DNA, Bacterial, Fatty Acids/analysis, Flavobacteriaceae/*classification/genetics/*isolation & purification/physiology, Nucleic Acid Hybridization, Phosphatidylethanolamines/analysis, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seawater/microbiology, Species Specificity, Vitamin K 2/analogs & derivativesEnzymology
Phylogeny33770231Aestuariibaculum sediminum sp. nov., a marine bacterium isolated from a tidal flat in Zhoushan.Wu ZC, Zhang XY, Sun C, Xu L, Fu GY, Xu XWArch Microbiol10.1007/s00203-021-02262-12021Flavobacteriaceae/classification/genetics/*isolation & purification, Phylogeny, Seawater/*microbiologyEnzymology

Reference

@idauthorstitledoi/urlID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
30515Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172684728776041
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/