Strain identifier

BacDive ID: 133791

Type strain: Yes

Species: Aestuariibaculum suncheonense

Strain history: C. O. Jeon SC17.

NCBI tax ID(s): 1028745 (species)

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General

@ref: 30515

BacDive-ID: 133791

keywords: rod-shaped, Gram-negative, aerobe, Bacteria, 16S sequence

description: Aestuariibaculum suncheonense KACC 16186 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from marine sediment.

NCBI tax id

  • NCBI tax id: 1028745
  • Matching level: species

strain history: C. O. Jeon SC17.

doi: 10.13145/bacdive133791.20211221.6

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidetes
  • domain: Bacteria
  • phylum: Bacteroidetes
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Aestuariibaculum
  • species: Aestuariibaculum suncheonense
  • full scientific name: Aestuariibaculum suncheonense Jeong et al. 2013

@ref: 30515

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Aestuariibaculum

species: Aestuariibaculum suncheonense

type strain: yes

Morphology

cell morphology

  • @ref: 30515
  • gram stain: negative
  • cell length: 2.5 µm
  • cell width: 0.6 µm
  • cell shape: rod-shaped
  • motility: no

pigmentation

  • @ref: 30515
  • production: yes

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
30515positivegrowth05-40
30515positiveoptimum27.5mesophilic
67770positivegrowth30mesophilic

culture pH

@refabilitytypepH
30515positivegrowth6-8.5
30515positiveoptimum7

Physiology and metabolism

oxygen tolerance

  • @ref: 30515
  • oxygen tolerance: aerobe

halophily

@refsaltgrowthtested relationconcentration
30515NaClpositivegrowth01-08 %
30515NaClpositiveoptimum1.5 %

observation

  • @ref: 67770
  • observation: quinones: MK-6

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3051530089acetate+carbon source
3051521217L-alaninamide+carbon source
3051516449alanine+carbon source
3051540585alpha-cyclodextrin+carbon source
3051522599arabinose+carbon source
3051522653asparagine+carbon source
3051535391aspartate+carbon source
3051523652dextrin+carbon source
3051528757fructose+carbon source
3051528260galactose+carbon source
3051517234glucose+carbon source
3051529987glutamate+carbon source
3051527570histidine+carbon source
30515182404-hydroxy-L-proline+carbon source
3051524996lactate+carbon source
3051517716lactose+carbon source
3051517306maltose+carbon source
3051537684mannose+carbon source
3051528053melibiose+carbon source
30515506227N-acetylglucosamine+carbon source
3051518257ornithine+carbon source
3051528044phenylalanine+carbon source
3051526271proline+carbon source
3051516634raffinose+carbon source
3051517822serine+carbon source
3051517992sucrose+carbon source
3051526986threonine+carbon source
3051553424tween 20+carbon source
3051516704uridine+carbon source
3051527248urocanic acid+carbon source
305154853esculin+hydrolysis
3051517632nitrate+reduction

metabolite production

  • @ref: 30515
  • Chebi-ID: 35581
  • metabolite: indole
  • production: yes

metabolite tests

  • @ref: 30515
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: +

enzymes

@refvalueactivityec
30515acid phosphatase+3.1.3.2
30515alkaline phosphatase+3.1.3.1
30515alpha-galactosidase+3.2.1.22
30515catalase+1.11.1.6
30515gelatinase+
30515cytochrome oxidase+1.9.3.1
30515urease+3.5.1.5

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
30515marine sediment
67770Sediment of a tidal flat in the Suncheon bayRepublic of KoreaKORAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Aquatic#Sediment

Sequence information

16S sequences

  • @ref: 30515
  • description: Aestuariibaculum suncheonense strain SC17 16S ribosomal RNA gene, partial sequence
  • accession: JF751043
  • length: 1482
  • database: nuccore
  • NCBI tax ID: 1028745

GC content

@refGC-contentmethod
3051546.4
6777046.4thermal denaturation, midpoint method (Tm)

External links

@ref: 30515

culture collection no.: KACC 16186, JCM 17789, SC 17

straininfo link

@refpassport
20218http://www.straininfo.net/strains/884038
20218http://www.straininfo.net/strains/884037

Reference

@idauthorstitledoi/urljournalpubmedID_cross_reference
20215D.Gleim, M.Kracht, N.Weiss et. al.Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes sincehttp://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.html
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.StrainInfo introduces electronic passports for microorganisms.10.1016/j.syapm.2013.11.002Syst Appl Microbiol. 37: 42-50 201424321274
2684710.1099/ijs.0.037846-022427453
30515Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172877604126847
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/