Strain identifier
BacDive ID: 133791
Type strain:
Species: Aestuariibaculum suncheonense
Strain history: C. O. Jeon SC17.
NCBI tax ID(s): 1028745 (species)
version 6 (current version)
General
@ref: 30515
BacDive-ID: 133791
keywords: rod-shaped, Gram-negative, aerobe, Bacteria, 16S sequence
description: Aestuariibaculum suncheonense KACC 16186 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from marine sediment.
NCBI tax id
- NCBI tax id: 1028745
- Matching level: species
strain history: C. O. Jeon SC17.
doi: 10.13145/bacdive133791.20211221.6
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidetes
- domain: Bacteria
- phylum: Bacteroidetes
- class: Flavobacteriia
- order: Flavobacteriales
- family: Flavobacteriaceae
- genus: Aestuariibaculum
- species: Aestuariibaculum suncheonense
- full scientific name: Aestuariibaculum suncheonense Jeong et al. 2013
@ref: 30515
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Flavobacteriaceae
genus: Aestuariibaculum
species: Aestuariibaculum suncheonense
type strain: yes
Morphology
cell morphology
- @ref: 30515
- gram stain: negative
- cell length: 2.5 µm
- cell width: 0.6 µm
- cell shape: rod-shaped
- motility: no
pigmentation
- @ref: 30515
- production: yes
Culture and growth conditions
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
30515 | positive | growth | 05-40 | |
30515 | positive | optimum | 27.5 | mesophilic |
67770 | positive | growth | 30 | mesophilic |
culture pH
@ref | ability | type | pH |
---|---|---|---|
30515 | positive | growth | 6-8.5 |
30515 | positive | optimum | 7 |
Physiology and metabolism
oxygen tolerance
- @ref: 30515
- oxygen tolerance: aerobe
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
30515 | NaCl | positive | growth | 01-08 % |
30515 | NaCl | positive | optimum | 1.5 % |
observation
- @ref: 67770
- observation: quinones: MK-6
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
30515 | 30089 | acetate | + | carbon source |
30515 | 21217 | L-alaninamide | + | carbon source |
30515 | 16449 | alanine | + | carbon source |
30515 | 40585 | alpha-cyclodextrin | + | carbon source |
30515 | 22599 | arabinose | + | carbon source |
30515 | 22653 | asparagine | + | carbon source |
30515 | 35391 | aspartate | + | carbon source |
30515 | 23652 | dextrin | + | carbon source |
30515 | 28757 | fructose | + | carbon source |
30515 | 28260 | galactose | + | carbon source |
30515 | 17234 | glucose | + | carbon source |
30515 | 29987 | glutamate | + | carbon source |
30515 | 27570 | histidine | + | carbon source |
30515 | 18240 | 4-hydroxy-L-proline | + | carbon source |
30515 | 24996 | lactate | + | carbon source |
30515 | 17716 | lactose | + | carbon source |
30515 | 17306 | maltose | + | carbon source |
30515 | 37684 | mannose | + | carbon source |
30515 | 28053 | melibiose | + | carbon source |
30515 | 506227 | N-acetylglucosamine | + | carbon source |
30515 | 18257 | ornithine | + | carbon source |
30515 | 28044 | phenylalanine | + | carbon source |
30515 | 26271 | proline | + | carbon source |
30515 | 16634 | raffinose | + | carbon source |
30515 | 17822 | serine | + | carbon source |
30515 | 17992 | sucrose | + | carbon source |
30515 | 26986 | threonine | + | carbon source |
30515 | 53424 | tween 20 | + | carbon source |
30515 | 16704 | uridine | + | carbon source |
30515 | 27248 | urocanic acid | + | carbon source |
30515 | 4853 | esculin | + | hydrolysis |
30515 | 17632 | nitrate | + | reduction |
metabolite production
- @ref: 30515
- Chebi-ID: 35581
- metabolite: indole
- production: yes
metabolite tests
- @ref: 30515
- Chebi-ID: 35581
- metabolite: indole
- indole test: +
enzymes
@ref | value | activity | ec |
---|---|---|---|
30515 | acid phosphatase | + | 3.1.3.2 |
30515 | alkaline phosphatase | + | 3.1.3.1 |
30515 | alpha-galactosidase | + | 3.2.1.22 |
30515 | catalase | + | 1.11.1.6 |
30515 | gelatinase | + | |
30515 | cytochrome oxidase | + | 1.9.3.1 |
30515 | urease | + | 3.5.1.5 |
Isolation, sampling and environmental information
isolation
@ref | sample type | country | origin.country | continent |
---|---|---|---|---|
30515 | marine sediment | |||
67770 | Sediment of a tidal flat in the Suncheon bay | Republic of Korea | KOR | Asia |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Aquatic | #Marine |
#Environmental | #Aquatic | #Sediment |
Sequence information
16S sequences
- @ref: 30515
- description: Aestuariibaculum suncheonense strain SC17 16S ribosomal RNA gene, partial sequence
- accession: JF751043
- length: 1482
- database: nuccore
- NCBI tax ID: 1028745
GC content
@ref | GC-content | method |
---|---|---|
30515 | 46.4 | |
67770 | 46.4 | thermal denaturation, midpoint method (Tm) |
External links
@ref: 30515
culture collection no.: KACC 16186, JCM 17789, SC 17
straininfo link
@ref | passport |
---|---|
20218 | http://www.straininfo.net/strains/884038 |
20218 | http://www.straininfo.net/strains/884037 |
Reference
@id | authors | title | doi/url | journal | pubmed | ID_cross_reference |
---|---|---|---|---|---|---|
20215 | D.Gleim, M.Kracht, N.Weiss et. al. | Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since | http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.html | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | StrainInfo introduces electronic passports for microorganisms. | 10.1016/j.syapm.2013.11.002 | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
26847 | 10.1099/ijs.0.037846-0 | 22427453 | ||||
30515 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 28776041 | 26847 | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ |