Strain identifier

BacDive ID: 133782

Type strain: Yes

Species: Kangiella marina

Strain Designation: KM1

Strain history: W. Y. Shieh KM1.

NCBI tax ID(s): 1079178 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 30478

BacDive-ID: 133782

keywords: 16S sequence, Bacteria, facultative aerobe, Gram-negative, rod-shaped

description: Kangiella marina KM1 is a facultative aerobe, Gram-negative, rod-shaped bacterium that was isolated from seawater.

NCBI tax id

  • NCBI tax id: 1079178
  • Matching level: species

strain history

  • @ref: 67770
  • history: W. Y. Shieh KM1.

doi: 10.13145/bacdive133782.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Oceanospirillales
  • family: Kangiellaceae
  • genus: Kangiella
  • species: Kangiella marina
  • full scientific name: Kangiella marina Jean et al. 2012

@ref: 30478

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Oceanospirillales

family: Kangiellaceae

genus: Kangiella

species: Kangiella marina

strain designation: KM1

type strain: yes

Morphology

cell morphology

  • @ref: 30478
  • gram stain: negative
  • cell length: 0.95 µm
  • cell width: 0.4 µm
  • cell shape: rod-shaped
  • motility: no

pigmentation

  • @ref: 30478
  • production: yes

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
30478positivegrowth15-40
30478positiveoptimum27.5mesophilic
67770positivegrowth30mesophilic

culture pH

  • @ref: 30478
  • ability: positive
  • type: growth
  • pH: 07-09
  • PH range: alkaliphile

Physiology and metabolism

oxygen tolerance

  • @ref: 30478
  • oxygen tolerance: facultative aerobe

spore formation

  • @ref: 30478
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
30478NaClpositivegrowth1-8 %
30478NaClpositiveoptimum3.50 %

observation

  • @ref: 67770
  • observation: quinones: Q-8

enzymes

@refvalueactivityec
30478alkaline phosphatase+3.1.3.1
30478catalase+1.11.1.6
30478gelatinase+
30478cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
30478seawater
67770Shallow coastal seawater of ShenaoNew Taipei CityTaiwanTWNAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Marine

taxonmaps

  • @ref: 69479
  • File name: preview.99_128861.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15954;96_2042;97_3722;98_4721;99_128861&stattab=map
  • Last taxonomy: Kangiella marina
  • 16S sequence: JN559388
  • Sequence Identity:
  • Total samples: 6
  • aquatic counts: 6

Sequence information

16S sequences

  • @ref: 30478
  • description: Kangiella marina strain KM1 16S ribosomal RNA gene, partial sequence
  • accession: JN559388
  • length: 1490
  • database: nuccore
  • NCBI tax ID: 1079178

GC content

@refGC-contentmethod
3047846.3
6777046.3high performance liquid chromatography (HPLC)

External links

@ref: 30478

culture collection no.: BCRC 80329, JCM 17728

literature

  • topic: Phylogeny
  • Pubmed-ID: 22081712
  • title: Kangiella taiwanensis sp. nov. and Kangiella marina sp. nov., marine bacteria isolated from shallow coastal water.
  • authors: Jean WD, Huang SP, Chen JS, Shieh WY
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.037010-0
  • year: 2011
  • mesh: Alcanivoraceae/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Molecular Sequence Data, Phospholipids/analysis, *Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Taiwan
  • topic2: Genetics

Reference

@idauthorstitledoi/urlID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
30478Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172681228776041
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/