Strain identifier
BacDive ID: 133782
Type strain:
Species: Kangiella marina
Strain Designation: KM1
Strain history: W. Y. Shieh KM1.
NCBI tax ID(s): 1079178 (species)
version 8.1 (current version)
General
@ref: 30478
BacDive-ID: 133782
keywords: 16S sequence, Bacteria, facultative aerobe, Gram-negative, rod-shaped
description: Kangiella marina KM1 is a facultative aerobe, Gram-negative, rod-shaped bacterium that was isolated from seawater.
NCBI tax id
- NCBI tax id: 1079178
- Matching level: species
strain history
- @ref: 67770
- history: W. Y. Shieh KM1.
doi: 10.13145/bacdive133782.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Oceanospirillales
- family: Kangiellaceae
- genus: Kangiella
- species: Kangiella marina
- full scientific name: Kangiella marina Jean et al. 2012
@ref: 30478
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Oceanospirillales
family: Kangiellaceae
genus: Kangiella
species: Kangiella marina
strain designation: KM1
type strain: yes
Morphology
cell morphology
- @ref: 30478
- gram stain: negative
- cell length: 0.95 µm
- cell width: 0.4 µm
- cell shape: rod-shaped
- motility: no
pigmentation
- @ref: 30478
- production: yes
Culture and growth conditions
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
30478 | positive | growth | 15-40 | |
30478 | positive | optimum | 27.5 | mesophilic |
67770 | positive | growth | 30 | mesophilic |
culture pH
- @ref: 30478
- ability: positive
- type: growth
- pH: 07-09
- PH range: alkaliphile
Physiology and metabolism
oxygen tolerance
- @ref: 30478
- oxygen tolerance: facultative aerobe
spore formation
- @ref: 30478
- spore formation: no
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
30478 | NaCl | positive | growth | 1-8 % |
30478 | NaCl | positive | optimum | 3.50 % |
observation
- @ref: 67770
- observation: quinones: Q-8
enzymes
@ref | value | activity | ec |
---|---|---|---|
30478 | alkaline phosphatase | + | 3.1.3.1 |
30478 | catalase | + | 1.11.1.6 |
30478 | gelatinase | + | |
30478 | cytochrome oxidase | + | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
30478 | seawater | ||||
67770 | Shallow coastal seawater of Shenao | New Taipei City | Taiwan | TWN | Asia |
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
- Cat3: #Marine
taxonmaps
- @ref: 69479
- File name: preview.99_128861.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15954;96_2042;97_3722;98_4721;99_128861&stattab=map
- Last taxonomy: Kangiella marina
- 16S sequence: JN559388
- Sequence Identity:
- Total samples: 6
- aquatic counts: 6
Sequence information
16S sequences
- @ref: 30478
- description: Kangiella marina strain KM1 16S ribosomal RNA gene, partial sequence
- accession: JN559388
- length: 1490
- database: nuccore
- NCBI tax ID: 1079178
GC content
@ref | GC-content | method |
---|---|---|
30478 | 46.3 | |
67770 | 46.3 | high performance liquid chromatography (HPLC) |
External links
@ref: 30478
culture collection no.: BCRC 80329, JCM 17728
literature
- topic: Phylogeny
- Pubmed-ID: 22081712
- title: Kangiella taiwanensis sp. nov. and Kangiella marina sp. nov., marine bacteria isolated from shallow coastal water.
- authors: Jean WD, Huang SP, Chen JS, Shieh WY
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.037010-0
- year: 2011
- mesh: Alcanivoraceae/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Molecular Sequence Data, Phospholipids/analysis, *Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Taiwan
- topic2: Genetics
Reference
@id | authors | title | doi/url | ID_cross_reference | pubmed |
---|---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
30478 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 26812 | 28776041 |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |