Strain identifier
BacDive ID: 133781
Type strain:
Species: Halopenitus persicus
Strain Designation: DC30
Strain history: <- M A Amoozegar, Univ. of Tehran, Iran
NCBI tax ID(s): 1048396 (species)
version 8.1 (current version)
General
@ref: 30476
BacDive-ID: 133781
keywords: genome sequence, 16S sequence, Archaea, aerobe, Gram-negative, rod-shaped
description: Halopenitus persicus DC30 is an aerobe, Gram-negative, rod-shaped archaeon that was isolated from hypersaline environment.
NCBI tax id
- NCBI tax id: 1048396
- Matching level: species
strain history
- @ref: 67771
- history: <- M A Amoozegar, Univ. of Tehran, Iran
doi: 10.13145/bacdive133781.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/methanobacteriota
- domain: Archaea
- phylum: Methanobacteriota
- class: Halobacteria
- order: Haloferacales
- family: Halorubraceae
- genus: Halopenitus
- species: Halopenitus persicus
- full scientific name: Halopenitus persicus Amoozegar et al. 2012
@ref: 30476
domain: Archaea
phylum: Euryarchaeota
class: Halobacteria
order: Haloferacales
family: Halorubraceae
genus: Halopenitus
species: Halopenitus persicus
strain designation: DC30
type strain: yes
Morphology
cell morphology
@ref | gram stain | cell length | cell width | cell shape | motility |
---|---|---|---|---|---|
30476 | negative | 7 µm | 1 µm | rod-shaped | no |
67771 | rod-shaped | no | |||
67771 | pleomorphic-shaped |
pigmentation
- @ref: 30476
- production: yes
Culture and growth conditions
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
30476 | positive | growth | 25-50 | |
30476 | positive | optimum | 40 | thermophilic |
67771 | positive | growth | 40 | thermophilic |
culture pH
@ref | ability | type | pH | PH range |
---|---|---|---|---|
30476 | positive | growth | 6.5-8.5 | alkaliphile |
30476 | positive | optimum | 7.5 |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
30476 | aerobe |
67771 | aerobe |
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
30476 | NaCl | positive | growth | 10-25 % |
30476 | NaCl | positive | optimum | 17 % |
observation
- @ref: 67771
- observation: quinones: MK-8(II-H(2))
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
30476 | 22653 | asparagine | + | carbon source |
30476 | 28757 | fructose | + | carbon source |
30476 | 28260 | galactose | + | carbon source |
30476 | 17234 | glucose | + | carbon source |
30476 | 15428 | glycine | + | carbon source |
30476 | 17306 | maltose | + | carbon source |
30476 | 26271 | proline | + | carbon source |
enzymes
@ref | value | activity | ec |
---|---|---|---|
30476 | catalase | + | 1.11.1.6 |
30476 | cytochrome oxidase | + | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
30476 | hypersaline environment | ||||
67771 | From salt water | Aran-Bidgol Salt Lake | Iran | IRN | Asia |
isolation source categories
- Cat1: #Condition
- Cat2: #Saline
Sequence information
16S sequences
- @ref: 30476
- description: Halopenitus persicus strain DC30 16S ribosomal RNA gene, partial sequence
- accession: JF979130
- length: 1440
- database: nuccore
- NCBI tax ID: 1048396
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Halopenitus persicus DC30,IBRC 10041,KCTC 4046 | GCA_900107205 | scaffold | ncbi | 1048396 |
66792 | Halopenitus persicus IBRC10041 | 2654587885 | draft | img | 1048396 |
66792 | Halopenitus persicus strain DC30,IBRC 10041,KCTC 4046 | 1048396.9 | wgs | patric | 1048396 |
GC content
@ref | GC-content |
---|---|
30476 | 66 |
67771 | 66.0 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | no | 79.459 | no |
glucose-ferment | no | 83.925 | no |
flagellated | no | 97.892 | no |
gram-positive | no | 97.3 | yes |
anaerobic | no | 94.801 | yes |
aerobic | yes | 80.044 | no |
halophile | yes | 91.69 | no |
spore-forming | no | 96.423 | no |
thermophile | no | 70.253 | no |
glucose-util | yes | 88.533 | yes |
External links
@ref: 30476
culture collection no.: IBRC 10041, KCTC 4046
straininfo link
- @ref: 91596
- straininfo: 380876
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 22003044 | Halopenitus persicus gen. nov., sp. nov., an archaeon from an inland salt lake. | Amoozegar MA, Makhdoumi-Kakhki A, Shahzadeh Fazeli SA, Azarbaijani R, Ventosa A | Int J Syst Evol Microbiol | 10.1099/ijs.0.036921-0 | 2011 | Base Composition, DNA, Archaeal/genetics, Halobacteriaceae/*classification/genetics/isolation & purification, Hydrogen-Ion Concentration, Lakes/*microbiology, Magnesium Chloride, Molecular Sequence Data, Phospholipids/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride, *Water Microbiology | Genetics |
Phylogeny | 23456805 | Halopenitus malekzadehii sp. nov., an extremely halophilic archaeon isolated from a salt lake. | Amoozegar MA, Makhdoumi-Kakhki A, Mehrshad M, Fazeli SAS, Ventosa A | Int J Syst Evol Microbiol | 10.1099/ijs.0.050500-0 | 2013 | Base Composition, DNA, Archaeal/genetics, Halobacteriaceae/*classification/genetics/isolation & purification, Iran, Lakes/microbiology, *Magnesium Chloride, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Salts, Sequence Analysis, DNA, *Sodium Chloride, Vitamin K 2/analogs & derivatives/analysis, *Water Microbiology | Genetics |
Phylogeny | 25074844 | Halopenitus salinus sp. nov., isolated from the brine of salted brown alga Laminaria. | Han D, Cui HL, Li ZR | Antonie Van Leeuwenhoek | 10.1007/s10482-014-0244-y | 2014 | Base Composition, China, Cluster Analysis, Cytosol/chemistry, DNA, Archaeal/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, DNA-Directed RNA Polymerases/genetics, Euryarchaeota/*classification/genetics/*isolation & purification/physiology, Glycolipids/analysis, Hydrogen-Ion Concentration, Laminaria/*microbiology, Molecular Sequence Data, Phospholipids/analysis, Phylogeny, Pigments, Biological/analysis, RNA, Ribosomal, 16S/genetics, *Salts, Sequence Analysis, DNA, Sodium Chloride/metabolism, Temperature | Genetics |
Reference
@id | authors | title | doi/url | ID_cross_reference | pubmed |
---|---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
30476 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 26811 | 28776041 |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | ||
67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | |||
91596 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID380876.1 |