Strain identifier

BacDive ID: 133781

Type strain: Yes

Species: Halopenitus persicus

Strain Designation: DC30

Strain history: <- M A Amoozegar, Univ. of Tehran, Iran

NCBI tax ID(s): 1048396 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 30476

BacDive-ID: 133781

keywords: genome sequence, 16S sequence, Archaea, aerobe, Gram-negative, rod-shaped

description: Halopenitus persicus DC30 is an aerobe, Gram-negative, rod-shaped archaeon that was isolated from hypersaline environment.

NCBI tax id

  • NCBI tax id: 1048396
  • Matching level: species

strain history

  • @ref: 67771
  • history: <- M A Amoozegar, Univ. of Tehran, Iran

doi: 10.13145/bacdive133781.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/archaea
  • keyword: phylum/methanobacteriota
  • domain: Archaea
  • phylum: Methanobacteriota
  • class: Halobacteria
  • order: Haloferacales
  • family: Halorubraceae
  • genus: Halopenitus
  • species: Halopenitus persicus
  • full scientific name: Halopenitus persicus Amoozegar et al. 2012

@ref: 30476

domain: Archaea

phylum: Euryarchaeota

class: Halobacteria

order: Haloferacales

family: Halorubraceae

genus: Halopenitus

species: Halopenitus persicus

strain designation: DC30

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
30476negative7 µm1 µmrod-shapedno
67771rod-shapedno
67771pleomorphic-shaped

pigmentation

  • @ref: 30476
  • production: yes

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
30476positivegrowth25-50
30476positiveoptimum40thermophilic
67771positivegrowth40thermophilic

culture pH

@refabilitytypepHPH range
30476positivegrowth6.5-8.5alkaliphile
30476positiveoptimum7.5

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
30476aerobe
67771aerobe

halophily

@refsaltgrowthtested relationconcentration
30476NaClpositivegrowth10-25 %
30476NaClpositiveoptimum17 %

observation

  • @ref: 67771
  • observation: quinones: MK-8(II-H(2))

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3047622653asparagine+carbon source
3047628757fructose+carbon source
3047628260galactose+carbon source
3047617234glucose+carbon source
3047615428glycine+carbon source
3047617306maltose+carbon source
3047626271proline+carbon source

enzymes

@refvalueactivityec
30476catalase+1.11.1.6
30476cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
30476hypersaline environment
67771From salt waterAran-Bidgol Salt LakeIranIRNAsia

isolation source categories

  • Cat1: #Condition
  • Cat2: #Saline

Sequence information

16S sequences

  • @ref: 30476
  • description: Halopenitus persicus strain DC30 16S ribosomal RNA gene, partial sequence
  • accession: JF979130
  • length: 1440
  • database: nuccore
  • NCBI tax ID: 1048396

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Halopenitus persicus DC30,IBRC 10041,KCTC 4046GCA_900107205scaffoldncbi1048396
66792Halopenitus persicus IBRC100412654587885draftimg1048396
66792Halopenitus persicus strain DC30,IBRC 10041,KCTC 40461048396.9wgspatric1048396

GC content

@refGC-content
3047666
6777166.0

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno79.459no
glucose-fermentno83.925no
flagellatedno97.892no
gram-positiveno97.3yes
anaerobicno94.801yes
aerobicyes80.044no
halophileyes91.69no
spore-formingno96.423no
thermophileno70.253no
glucose-utilyes88.533yes

External links

@ref: 30476

culture collection no.: IBRC 10041, KCTC 4046

straininfo link

  • @ref: 91596
  • straininfo: 380876

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny22003044Halopenitus persicus gen. nov., sp. nov., an archaeon from an inland salt lake.Amoozegar MA, Makhdoumi-Kakhki A, Shahzadeh Fazeli SA, Azarbaijani R, Ventosa AInt J Syst Evol Microbiol10.1099/ijs.0.036921-02011Base Composition, DNA, Archaeal/genetics, Halobacteriaceae/*classification/genetics/isolation & purification, Hydrogen-Ion Concentration, Lakes/*microbiology, Magnesium Chloride, Molecular Sequence Data, Phospholipids/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride, *Water MicrobiologyGenetics
Phylogeny23456805Halopenitus malekzadehii sp. nov., an extremely halophilic archaeon isolated from a salt lake.Amoozegar MA, Makhdoumi-Kakhki A, Mehrshad M, Fazeli SAS, Ventosa AInt J Syst Evol Microbiol10.1099/ijs.0.050500-02013Base Composition, DNA, Archaeal/genetics, Halobacteriaceae/*classification/genetics/isolation & purification, Iran, Lakes/microbiology, *Magnesium Chloride, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Salts, Sequence Analysis, DNA, *Sodium Chloride, Vitamin K 2/analogs & derivatives/analysis, *Water MicrobiologyGenetics
Phylogeny25074844Halopenitus salinus sp. nov., isolated from the brine of salted brown alga Laminaria.Han D, Cui HL, Li ZRAntonie Van Leeuwenhoek10.1007/s10482-014-0244-y2014Base Composition, China, Cluster Analysis, Cytosol/chemistry, DNA, Archaeal/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, DNA-Directed RNA Polymerases/genetics, Euryarchaeota/*classification/genetics/*isolation & purification/physiology, Glycolipids/analysis, Hydrogen-Ion Concentration, Laminaria/*microbiology, Molecular Sequence Data, Phospholipids/analysis, Phylogeny, Pigments, Biological/analysis, RNA, Ribosomal, 16S/genetics, *Salts, Sequence Analysis, DNA, Sodium Chloride/metabolism, TemperatureGenetics

Reference

@idauthorstitledoi/urlID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
30476Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172681128776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
91596Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID380876.1