Strain identifier

BacDive ID: 133771

Type strain: Yes

Species: Marinomonas hwangdonensis

Strain Designation: HDW-15

Strain history: <- JH Yoon, KRIBB

NCBI tax ID(s): 1053647 (species)

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General

@ref: 30460

BacDive-ID: 133771

keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, motile, rod-shaped

description: Marinomonas hwangdonensis HDW-15 is an aerobe, Gram-negative, motile bacterium that was isolated from seawater.

NCBI tax id

  • NCBI tax id: 1053647
  • Matching level: species

strain history

  • @ref: 67771
  • history: <- JH Yoon, KRIBB

doi: 10.13145/bacdive133771.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Oceanospirillales
  • family: Oceanospirillaceae
  • genus: Marinomonas
  • species: Marinomonas hwangdonensis
  • full scientific name: Marinomonas hwangdonensis Jung et al. 2012

@ref: 30460

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Oceanospirillales

family: Oceanospirillaceae

genus: Marinomonas

species: Marinomonas hwangdonensis

strain designation: HDW-15

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
30460negative2 µm0.35 µmrod-shapedyes
67771negative

colony morphology

  • @ref: 62614
  • incubation period: 2 days

pigmentation

  • @ref: 30460
  • production: yes

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
30460positivegrowth04-37
30460positiveoptimum25mesophilic
62614positivegrowth30mesophilic
67771positivegrowth25mesophilic

culture pH

@refabilitytypepH
30460positivegrowth5.5-8
30460positiveoptimum7.5

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
30460aerobe
62614aerobe
67771aerobe

spore formation

  • @ref: 30460
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
30460NaClpositivegrowth0-13 %
30460NaClpositiveoptimum2 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3046017057cellobiose+carbon source
3046028260galactose+carbon source

Isolation, sampling and environmental information

isolation

@refsample typesampling dategeographic locationcountryorigin.countrycontinent
30460seawater
62614Sea water2007Hwang-do,Yellow SeaRepublic of KoreaKORAsia
67771From seawaterYellow SeaRepublic of KoreaKORAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Marine

taxonmaps

  • @ref: 69479
  • File name: preview.99_23559.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_113;96_407;97_461;98_9362;99_23559&stattab=map
  • Last taxonomy: Marinomonas
  • 16S sequence: JN087530
  • Sequence Identity:
  • Total samples: 297
  • soil counts: 11
  • aquatic counts: 273
  • animal counts: 10
  • plant counts: 3

Sequence information

16S sequences

  • @ref: 30460
  • description: Marinomonas hwangdonensis strain HDW-15 16S ribosomal RNA gene, partial sequence
  • accession: JN087530
  • length: 1504
  • database: nuccore
  • NCBI tax ID: 1053647

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Marinomonas hwangdonensis HDW-15GCA_003721245contigncbi1053647
66792Marinomonas hwangdonensis HDW-152834262506draftimg1053647

GC content

  • @ref: 30460
  • GC-content: 48.7

External links

@ref: 30460

culture collection no.: KCTC 23661, CCUG 61321

straininfo link

  • @ref: 91590
  • straininfo: 408807

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny22021582Marinomonas hwangdonensis sp. nov., isolated from seawater.Jung YT, Oh TK, Yoon JHInt J Syst Evol Microbiol10.1099/ijs.0.036582-02011Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Marinomonas/*classification/genetics/isolation & purification, Molecular Sequence Data, Phospholipids/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seawater/*microbiology, Sequence Analysis, DNAGenetics
Phylogeny35550236Marinomonas lutimaris sp. nov., isolated from a tidal flat sediment of the East China Sea.Gao Y, Wei Y, Wang PInt J Syst Evol Microbiol10.1099/ijsem.0.0053682022Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Marinomonas, Phospholipids/chemistry, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNATranscriptome

Reference

@idauthorstitledoi/urlID_cross_referencepubmedcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
30460Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172679528776041
62614Curators of the CCUGhttps://www.ccug.se/strain?id=61321Culture Collection University of Gothenburg (CCUG) (CCUG 61321)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
91590Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID408807.1