Strain identifier
BacDive ID: 133764
Type strain:
Species: Rheinheimera longhuensis
Strain Designation: LH2-2
NCBI tax ID(s): 1091037 (species)
version 8.1 (current version)
General
@ref: 30433
BacDive-ID: 133764
keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, motile, rod-shaped
description: Rheinheimera longhuensis LH2-2 is an aerobe, Gram-negative, motile bacterium that was isolated from freshwater .
NCBI tax id
- NCBI tax id: 1091037
- Matching level: species
doi: 10.13145/bacdive133764.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Chromatiales
- family: Chromatiaceae
- genus: Rheinheimera
- species: Rheinheimera longhuensis
- full scientific name: Rheinheimera longhuensis Liu et al. 2012
synonyms
- @ref: 20215
- synonym: Alishewanella longhuensis
@ref: 30433
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Chromatiales
family: Chromatiaceae
genus: Rheinheimera
species: Rheinheimera longhuensis
strain designation: LH2-2
type strain: yes
Morphology
cell morphology
@ref | gram stain | cell length | cell width | cell shape | motility | confidence |
---|---|---|---|---|---|---|
30433 | negative | 3 µm | 0.4 µm | rod-shaped | yes | |
69480 | yes | 98.275 | ||||
69480 | negative | 99.939 |
pigmentation
- @ref: 30433
- production: no
Culture and growth conditions
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
30433 | positive | growth | 0-36 | |
30433 | positive | optimum | 30 | mesophilic |
culture pH
@ref | ability | type | pH | PH range |
---|---|---|---|---|
30433 | positive | growth | 6.5-11 | alkaliphile |
30433 | positive | optimum | 8.3 |
Physiology and metabolism
oxygen tolerance
- @ref: 30433
- oxygen tolerance: aerobe
spore formation
@ref | spore formation | confidence |
---|---|---|
30433 | no | |
69481 | no | 100 |
69480 | no | 99.954 |
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
30433 | NaCl | positive | growth | 0-2 % |
30433 | NaCl | positive | optimum | 1 % |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
30433 | 22653 | asparagine | + | carbon source |
30433 | 17057 | cellobiose | + | carbon source |
30433 | 28757 | fructose | + | carbon source |
30433 | 17234 | glucose | + | carbon source |
30433 | 29987 | glutamate | + | carbon source |
30433 | 28087 | glycogen | + | carbon source |
30433 | 25115 | malate | + | carbon source |
30433 | 17306 | maltose | + | carbon source |
30433 | 506227 | N-acetylglucosamine | + | carbon source |
30433 | 17992 | sucrose | + | carbon source |
30433 | 27082 | trehalose | + | carbon source |
30433 | 4853 | esculin | + | hydrolysis |
30433 | 17632 | nitrate | + | reduction |
enzymes
@ref | value | activity | ec |
---|---|---|---|
30433 | acid phosphatase | + | 3.1.3.2 |
30433 | alkaline phosphatase | + | 3.1.3.1 |
30433 | catalase | + | 1.11.1.6 |
30433 | gelatinase | + | |
30433 | cytochrome oxidase | + | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
- @ref: 30433
- sample type: freshwater (river, lake, pond)
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Aquatic | #Freshwater |
#Environmental | #Aquatic | #Lake (large) |
#Environmental | #Aquatic | #Pond (small) |
#Environmental | #Aquatic | #River (Creek) |
Sequence information
16S sequences
- @ref: 30433
- description: Rheinheimera longhuensis strain LH2-2 16S ribosomal RNA gene, partial sequence
- accession: EU183319
- length: 1488
- database: nuccore
- NCBI tax ID: 1091037
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Alishewanella longhuensis CGMCC 1.7003 | GCA_014653435 | scaffold | ncbi | 1091037 |
66792 | Alishewanella longhuensis strain CGMCC 1.7003 | 1091037.3 | wgs | patric | 1091037 |
GC content
- @ref: 30433
- GC-content: 47
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
flagellated | yes | 78.475 | no |
gram-positive | no | 99.133 | yes |
anaerobic | no | 94.705 | no |
aerobic | yes | 82.583 | no |
halophile | no | 88.975 | yes |
spore-forming | no | 94.659 | yes |
thermophile | no | 99.522 | yes |
glucose-util | yes | 88.172 | yes |
motile | yes | 90.613 | no |
glucose-ferment | no | 80.708 | no |
External links
@ref: 30433
culture collection no.: CGMCC 1.7003, NBRC 105632
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 22268075 | Rheinheimera longhuensis sp. nov., isolated from a slightly alkaline lake, and emended description of genus Rheinheimera Brettar et al. 2002. | Liu Y, Jiang JT, Xu CJ, Liu YH, Song XF, Li H, Liu ZP | Int J Syst Evol Microbiol | 10.1099/ijs.0.036020-0 | 2012 | Bacterial Typing Techniques, Base Composition, China, Chromatiaceae/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/analysis, Genes, Bacterial, Lakes/*microbiology, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Ubiquinone/analysis, *Water Microbiology | Genetics |
Phylogeny | 24408524 | Rheinheimera tuosuensis sp. nov., isolated from a saline lake. | Zhong ZP, Liu Y, Liu LZ, Wang F, Zhou YG, Liu ZP | Int J Syst Evol Microbiol | 10.1099/ijs.0.056473-0 | 2014 | Bacterial Typing Techniques, Base Composition, China, Chromatiaceae/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial, Lakes/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, *Salinity, Sequence Analysis, DNA, Ubiquinone/chemistry | Genetics |
Phylogeny | 28612170 | Emended description of the family Chromatiaceae, phylogenetic analyses of the genera Alishewanella, Rheinheimera and Arsukibacterium, transfer of Rheinheimera longhuensis LH2-2(T) to the genus Alishewanella and description of Alishewanella alkalitolerans sp. nov. from Lonar Lake, India. | Sisinthy S, Chakraborty D, Adicherla H, Gundlapally SR | Antonie Van Leeuwenhoek | 10.1007/s10482-017-0896-5 | 2017 | Alteromonadaceae/*classification/genetics, Chromatiaceae/chemistry/*classification/genetics, India, Lakes/*microbiology, *Phylogeny, RNA, Ribosomal, 16S/genetics, Species Specificity |
Reference
@id | authors | title | doi/url | ID_cross_reference | pubmed |
---|---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
30433 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 26769 | 28776041 |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | ||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | ||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |