Strain identifier

BacDive ID: 133764

Type strain: Yes

Species: Rheinheimera longhuensis

Strain Designation: LH2-2

NCBI tax ID(s): 1091037 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 30433

BacDive-ID: 133764

keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, motile, rod-shaped

description: Rheinheimera longhuensis LH2-2 is an aerobe, Gram-negative, motile bacterium that was isolated from freshwater .

NCBI tax id

  • NCBI tax id: 1091037
  • Matching level: species

doi: 10.13145/bacdive133764.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Chromatiales
  • family: Chromatiaceae
  • genus: Rheinheimera
  • species: Rheinheimera longhuensis
  • full scientific name: Rheinheimera longhuensis Liu et al. 2012
  • synonyms

    • @ref: 20215
    • synonym: Alishewanella longhuensis

@ref: 30433

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Chromatiales

family: Chromatiaceae

genus: Rheinheimera

species: Rheinheimera longhuensis

strain designation: LH2-2

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
30433negative3 µm0.4 µmrod-shapedyes
69480yes98.275
69480negative99.939

pigmentation

  • @ref: 30433
  • production: no

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
30433positivegrowth0-36
30433positiveoptimum30mesophilic

culture pH

@refabilitytypepHPH range
30433positivegrowth6.5-11alkaliphile
30433positiveoptimum8.3

Physiology and metabolism

oxygen tolerance

  • @ref: 30433
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
30433no
69481no100
69480no99.954

halophily

@refsaltgrowthtested relationconcentration
30433NaClpositivegrowth0-2 %
30433NaClpositiveoptimum1 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3043322653asparagine+carbon source
3043317057cellobiose+carbon source
3043328757fructose+carbon source
3043317234glucose+carbon source
3043329987glutamate+carbon source
3043328087glycogen+carbon source
3043325115malate+carbon source
3043317306maltose+carbon source
30433506227N-acetylglucosamine+carbon source
3043317992sucrose+carbon source
3043327082trehalose+carbon source
304334853esculin+hydrolysis
3043317632nitrate+reduction

enzymes

@refvalueactivityec
30433acid phosphatase+3.1.3.2
30433alkaline phosphatase+3.1.3.1
30433catalase+1.11.1.6
30433gelatinase+
30433cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

  • @ref: 30433
  • sample type: freshwater (river, lake, pond)

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Freshwater
#Environmental#Aquatic#Lake (large)
#Environmental#Aquatic#Pond (small)
#Environmental#Aquatic#River (Creek)

Sequence information

16S sequences

  • @ref: 30433
  • description: Rheinheimera longhuensis strain LH2-2 16S ribosomal RNA gene, partial sequence
  • accession: EU183319
  • length: 1488
  • database: nuccore
  • NCBI tax ID: 1091037

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Alishewanella longhuensis CGMCC 1.7003GCA_014653435scaffoldncbi1091037
66792Alishewanella longhuensis strain CGMCC 1.70031091037.3wgspatric1091037

GC content

  • @ref: 30433
  • GC-content: 47

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
flagellatedyes78.475no
gram-positiveno99.133yes
anaerobicno94.705no
aerobicyes82.583no
halophileno88.975yes
spore-formingno94.659yes
thermophileno99.522yes
glucose-utilyes88.172yes
motileyes90.613no
glucose-fermentno80.708no

External links

@ref: 30433

culture collection no.: CGMCC 1.7003, NBRC 105632

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny22268075Rheinheimera longhuensis sp. nov., isolated from a slightly alkaline lake, and emended description of genus Rheinheimera Brettar et al. 2002.Liu Y, Jiang JT, Xu CJ, Liu YH, Song XF, Li H, Liu ZPInt J Syst Evol Microbiol10.1099/ijs.0.036020-02012Bacterial Typing Techniques, Base Composition, China, Chromatiaceae/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/analysis, Genes, Bacterial, Lakes/*microbiology, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Ubiquinone/analysis, *Water MicrobiologyGenetics
Phylogeny24408524Rheinheimera tuosuensis sp. nov., isolated from a saline lake.Zhong ZP, Liu Y, Liu LZ, Wang F, Zhou YG, Liu ZPInt J Syst Evol Microbiol10.1099/ijs.0.056473-02014Bacterial Typing Techniques, Base Composition, China, Chromatiaceae/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial, Lakes/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, *Salinity, Sequence Analysis, DNA, Ubiquinone/chemistryGenetics
Phylogeny28612170Emended description of the family Chromatiaceae, phylogenetic analyses of the genera Alishewanella, Rheinheimera and Arsukibacterium, transfer of Rheinheimera longhuensis LH2-2(T) to the genus Alishewanella and description of Alishewanella alkalitolerans sp. nov. from Lonar Lake, India.Sisinthy S, Chakraborty D, Adicherla H, Gundlapally SRAntonie Van Leeuwenhoek10.1007/s10482-017-0896-52017Alteromonadaceae/*classification/genetics, Chromatiaceae/chemistry/*classification/genetics, India, Lakes/*microbiology, *Phylogeny, RNA, Ribosomal, 16S/genetics, Species Specificity

Reference

@idauthorstitledoi/urlID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
30433Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172676928776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1