Strain identifier

BacDive ID: 133763

Type strain: Yes

Species: Rhodovulum tesquicola

Strain Designation: A-36s

NCBI tax ID(s): 540254 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 30429

BacDive-ID: 133763

keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, mesophilic, motile, rod-shaped

description: Rhodovulum tesquicola A-36s is a facultative anaerobe, mesophilic, motile bacterium that was isolated from freshwater .

NCBI tax id

  • NCBI tax id: 540254
  • Matching level: species

doi: 10.13145/bacdive133763.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodobacterales
  • family: Roseobacteraceae
  • genus: Rhodovulum
  • species: Rhodovulum tesquicola
  • full scientific name: Rhodovulum tesquicola Kompantseva et al. 2012

@ref: 30429

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhodobacterales

family: Rhodobacteraceae

genus: Rhodovulum

species: Rhodovulum tesquicola

strain designation: A-36s

type strain: yes

Morphology

cell morphology

  • @ref: 30429
  • cell length: 1.75 µm
  • cell width: 0.6 µm
  • cell shape: rod-shaped
  • motility: yes

pigmentation

  • @ref: 30429
  • production: yes

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
30429positivegrowth25-35mesophilic
30429positiveoptimum30mesophilic

culture pH

@refabilitytypepHPH range
30429positivegrowth7.5-10alkaliphile
30429positiveoptimum8.75

Physiology and metabolism

oxygen tolerance

  • @ref: 30429
  • oxygen tolerance: facultative anaerobe

halophily

@refsaltgrowthtested relationconcentration
30429NaClpositivegrowth0.3-10 %
30429NaClpositiveoptimum2 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3042930089acetate+carbon source
3042916449alanine+carbon source
3042922599arabinose+carbon source
3042929016arginine+carbon source
3042935391aspartate+carbon source
3042916947citrate+carbon source
3042916236ethanol+carbon source
3042915740formate+carbon source
3042928757fructose+carbon source
3042917234glucose+carbon source
3042929987glutamate+carbon source
3042917754glycerol+carbon source
3042924996lactate+carbon source
3042925115malate+carbon source
3042917306maltose+carbon source
3042937684mannose+carbon source
3042918257ornithine+carbon source
3042926271proline+carbon source
3042917272propionate+carbon source
3042915361pyruvate+carbon source
3042930031succinate+carbon source
3042926986threonine+carbon source
3042931011valerate+carbon source

Isolation, sampling and environmental information

isolation

  • @ref: 30429
  • sample type: freshwater (river, lake, pond)

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Freshwater
#Environmental#Aquatic#Lake (large)
#Environmental#Aquatic#Pond (small)
#Environmental#Aquatic#River (Creek)

taxonmaps

  • @ref: 69479
  • File name: preview.99_38456.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_19;96_15318;97_22412;98_28205;99_38456&stattab=map
  • Last taxonomy: Rhodovulum tesquicola
  • 16S sequence: EU741685
  • Sequence Identity:
  • Total samples: 12
  • soil counts: 2
  • aquatic counts: 9
  • animal counts: 1

Sequence information

16S sequences

  • @ref: 30429
  • description: Rhodovulum tesquicola strain A-36s 16S ribosomal RNA gene, partial sequence
  • accession: EU741685
  • length: 1370
  • database: nuccore
  • NCBI tax ID: 540254

Genome sequences

  • @ref: 66792
  • description: Rhodovulum tesquicola A-36s
  • accession: GCA_024128855
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 540254

GC content

  • @ref: 30429
  • GC-content: 65.4

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedno78.086no
gram-positiveno98.525no
anaerobicno68.476yes
aerobicno76.416no
halophileyes68.608no
spore-formingno94.284no
motileyes77.538yes
glucose-fermentno88.863no
thermophileno94.299yes
glucose-utilyes60.283no

External links

@ref: 30429

culture collection no.: VKM B-2491, ATCC BAA 1573

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny22286907Rhodovulum tesquicola sp. nov., a haloalkaliphilic purple non-sulfur bacterium from brackish steppe soda lakes.Kompantseva EI, Komova AV, Novikov AA, Kostrikina NAInt J Syst Evol Microbiol10.1099/ijs.0.035857-02012DNA, Bacterial/genetics, Fatty Acids/analysis, Lakes/*microbiology, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rhodobacteraceae/classification/genetics/isolation & purification, Rhodovulum/*classification/genetics/isolation & purification, Sequence Analysis, DNA, Siberia, Sulfates/metabolism, Ubiquinone/analysis, *Water MicrobiologyGenetics
36014033Nitrogen Fixation Activity and Genome Analysis of a Moderately Haloalkaliphilic Anoxygenic Phototrophic Bacterium Rhodovulum tesquicola.Komova AV, Bakhmutova ED, Izotova AO, Kochetova ES, Toshchakov SV, Namsaraev ZB, Golichenkov MV, Korzhenkov AAMicroorganisms10.3390/microorganisms100816152022

Reference

@idauthorstitledoi/urlID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
30429Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172676528776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/