Strain identifier
BacDive ID: 133763
Type strain:
Species: Rhodovulum tesquicola
Strain Designation: A-36s
NCBI tax ID(s): 540254 (species)
version 8.1 (current version)
General
@ref: 30429
BacDive-ID: 133763
keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, mesophilic, motile, rod-shaped
description: Rhodovulum tesquicola A-36s is a facultative anaerobe, mesophilic, motile bacterium that was isolated from freshwater .
NCBI tax id
- NCBI tax id: 540254
- Matching level: species
doi: 10.13145/bacdive133763.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodobacterales
- family: Roseobacteraceae
- genus: Rhodovulum
- species: Rhodovulum tesquicola
- full scientific name: Rhodovulum tesquicola Kompantseva et al. 2012
@ref: 30429
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhodobacterales
family: Rhodobacteraceae
genus: Rhodovulum
species: Rhodovulum tesquicola
strain designation: A-36s
type strain: yes
Morphology
cell morphology
- @ref: 30429
- cell length: 1.75 µm
- cell width: 0.6 µm
- cell shape: rod-shaped
- motility: yes
pigmentation
- @ref: 30429
- production: yes
Culture and growth conditions
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
30429 | positive | growth | 25-35 | mesophilic |
30429 | positive | optimum | 30 | mesophilic |
culture pH
@ref | ability | type | pH | PH range |
---|---|---|---|---|
30429 | positive | growth | 7.5-10 | alkaliphile |
30429 | positive | optimum | 8.75 |
Physiology and metabolism
oxygen tolerance
- @ref: 30429
- oxygen tolerance: facultative anaerobe
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
30429 | NaCl | positive | growth | 0.3-10 % |
30429 | NaCl | positive | optimum | 2 % |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
30429 | 30089 | acetate | + | carbon source |
30429 | 16449 | alanine | + | carbon source |
30429 | 22599 | arabinose | + | carbon source |
30429 | 29016 | arginine | + | carbon source |
30429 | 35391 | aspartate | + | carbon source |
30429 | 16947 | citrate | + | carbon source |
30429 | 16236 | ethanol | + | carbon source |
30429 | 15740 | formate | + | carbon source |
30429 | 28757 | fructose | + | carbon source |
30429 | 17234 | glucose | + | carbon source |
30429 | 29987 | glutamate | + | carbon source |
30429 | 17754 | glycerol | + | carbon source |
30429 | 24996 | lactate | + | carbon source |
30429 | 25115 | malate | + | carbon source |
30429 | 17306 | maltose | + | carbon source |
30429 | 37684 | mannose | + | carbon source |
30429 | 18257 | ornithine | + | carbon source |
30429 | 26271 | proline | + | carbon source |
30429 | 17272 | propionate | + | carbon source |
30429 | 15361 | pyruvate | + | carbon source |
30429 | 30031 | succinate | + | carbon source |
30429 | 26986 | threonine | + | carbon source |
30429 | 31011 | valerate | + | carbon source |
Isolation, sampling and environmental information
isolation
- @ref: 30429
- sample type: freshwater (river, lake, pond)
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Aquatic | #Freshwater |
#Environmental | #Aquatic | #Lake (large) |
#Environmental | #Aquatic | #Pond (small) |
#Environmental | #Aquatic | #River (Creek) |
taxonmaps
- @ref: 69479
- File name: preview.99_38456.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_19;96_15318;97_22412;98_28205;99_38456&stattab=map
- Last taxonomy: Rhodovulum tesquicola
- 16S sequence: EU741685
- Sequence Identity:
- Total samples: 12
- soil counts: 2
- aquatic counts: 9
- animal counts: 1
Sequence information
16S sequences
- @ref: 30429
- description: Rhodovulum tesquicola strain A-36s 16S ribosomal RNA gene, partial sequence
- accession: EU741685
- length: 1370
- database: nuccore
- NCBI tax ID: 540254
Genome sequences
- @ref: 66792
- description: Rhodovulum tesquicola A-36s
- accession: GCA_024128855
- assembly level: contig
- database: ncbi
- NCBI tax ID: 540254
GC content
- @ref: 30429
- GC-content: 65.4
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
flagellated | no | 78.086 | no |
gram-positive | no | 98.525 | no |
anaerobic | no | 68.476 | yes |
aerobic | no | 76.416 | no |
halophile | yes | 68.608 | no |
spore-forming | no | 94.284 | no |
motile | yes | 77.538 | yes |
glucose-ferment | no | 88.863 | no |
thermophile | no | 94.299 | yes |
glucose-util | yes | 60.283 | no |
External links
@ref: 30429
culture collection no.: VKM B-2491, ATCC BAA 1573
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 22286907 | Rhodovulum tesquicola sp. nov., a haloalkaliphilic purple non-sulfur bacterium from brackish steppe soda lakes. | Kompantseva EI, Komova AV, Novikov AA, Kostrikina NA | Int J Syst Evol Microbiol | 10.1099/ijs.0.035857-0 | 2012 | DNA, Bacterial/genetics, Fatty Acids/analysis, Lakes/*microbiology, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rhodobacteraceae/classification/genetics/isolation & purification, Rhodovulum/*classification/genetics/isolation & purification, Sequence Analysis, DNA, Siberia, Sulfates/metabolism, Ubiquinone/analysis, *Water Microbiology | Genetics |
36014033 | Nitrogen Fixation Activity and Genome Analysis of a Moderately Haloalkaliphilic Anoxygenic Phototrophic Bacterium Rhodovulum tesquicola. | Komova AV, Bakhmutova ED, Izotova AO, Kochetova ES, Toshchakov SV, Namsaraev ZB, Golichenkov MV, Korzhenkov AA | Microorganisms | 10.3390/microorganisms10081615 | 2022 |
Reference
@id | authors | title | doi/url | ID_cross_reference | pubmed |
---|---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
30429 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 26765 | 28776041 |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | ||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |