Strain identifier
BacDive ID: 133752
Type strain:
Species: Microvirga lupini
Strain Designation: Lut6
NCBI tax ID(s): 420324 (species)
version 8.1 (current version)
General
@ref: 30397
BacDive-ID: 133752
keywords: genome sequence, Bacteria, aerobe, Gram-negative, rod-shaped
description: Microvirga lupini Lut6 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from plant associated.
NCBI tax id
- NCBI tax id: 420324
- Matching level: species
doi: 10.13145/bacdive133752.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Methylobacteriaceae
- genus: Microvirga
- species: Microvirga lupini
- full scientific name: Microvirga lupini Ardley et al. 2012
@ref: 30397
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Hyphomicrobiales
family: Methylobacteriaceae
genus: Microvirga
species: Microvirga lupini
strain designation: Lut6
type strain: yes
Morphology
cell morphology
- @ref: 30397
- gram stain: negative
- cell length: 1.6 µm
- cell width: 0.45 µm
- cell shape: rod-shaped
- motility: no
pigmentation
- @ref: 30397
- production: yes
Culture and growth conditions
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
30397 | positive | growth | 10-43 | |
30397 | positive | optimum | 39 | mesophilic |
culture pH
@ref | ability | type | pH | PH range |
---|---|---|---|---|
30397 | positive | growth | 5.5-9.5 | alkaliphile |
30397 | positive | optimum | 7.75 |
Physiology and metabolism
oxygen tolerance
- @ref: 30397
- oxygen tolerance: aerobe
spore formation
- @ref: 30397
- spore formation: no
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
30397 | NaCl | positive | growth | 0-1.5 % |
30397 | NaCl | positive | optimum | 0.25 % |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
30397 | 22599 | arabinose | + | carbon source |
30397 | 17057 | cellobiose | + | carbon source |
30397 | 16236 | ethanol | + | carbon source |
30397 | 28757 | fructose | + | carbon source |
30397 | 17234 | glucose | + | carbon source |
30397 | 17754 | glycerol | + | carbon source |
30397 | 30031 | succinate | + | carbon source |
enzymes
@ref | value | activity | ec |
---|---|---|---|
30397 | catalase | + | 1.11.1.6 |
30397 | urease | + | 3.5.1.5 |
Isolation, sampling and environmental information
isolation
- @ref: 30397
- sample type: plant associated
isolation source categories
- Cat1: #Host
- Cat2: #Plants
Sequence information
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Microvirga lupini Lut6 | GCA_000517005 | scaffold | ncbi | 420324 |
66792 | Microvirga lupini Lut6 | 2508501050 | draft | img | 420324 |
GC content
- @ref: 30397
- GC-content: 61.9
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | yes | 80.225 | no |
flagellated | no | 82.52 | yes |
gram-positive | no | 97.678 | yes |
anaerobic | no | 98.584 | yes |
halophile | no | 90.867 | no |
spore-forming | no | 93.72 | yes |
thermophile | no | 98.107 | yes |
glucose-util | yes | 92.804 | yes |
aerobic | yes | 93.941 | yes |
glucose-ferment | no | 91.843 | no |
External links
@ref: 30397
culture collection no.: LMG 26460, HAMBI 3236
straininfo link
- @ref: 91584
- straininfo: 377737
literature
- topic: Phylogeny
- Pubmed-ID: 22199210
- title: Microvirga lupini sp. nov., Microvirga lotononidis sp. nov. and Microvirga zambiensis sp. nov. are alphaproteobacterial root-nodule bacteria that specifically nodulate and fix nitrogen with geographically and taxonomically separate legume hosts.
- authors: Ardley JK, Parker MA, De Meyer SE, Trengove RD, O'Hara GW, Reeve WG, Yates RJ, Dilworth MJ, Willems A, Howieson JG
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.035097-0
- year: 2011
- mesh: Bacterial Typing Techniques, DNA, Bacterial/genetics, Fabaceae/*microbiology, Fatty Acids/analysis, Methylobacteriaceae/*classification/genetics/isolation & purification, Molecular Sequence Data, Nitrogen Fixation, *Phylogeny, Plant Root Nodulation, Plant Roots/microbiology, RNA, Ribosomal, 16S/genetics, Texas, Zambia
- topic2: Genetics
Reference
@id | authors | title | doi/url | ID_cross_reference | pubmed |
---|---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
30397 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 26734 | 28776041 |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | ||
91584 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID377737.1 |