Strain identifier
BacDive ID: 133737
Type strain: 
Species: Pelosinus defluvii
Strain Designation: SHI-1
NCBI tax ID(s): 1076412 (species)
version 9 (current version)
General
@ref: 30339
BacDive-ID: 133737
keywords: 16S sequence, Bacteria, anaerobe, spore-forming, Gram-negative, motile, rod-shaped
description: Pelosinus defluvii SHI-1 is an anaerobe, spore-forming, Gram-negative bacterium that was isolated from Contaminated groundwater.
NCBI tax id
- NCBI tax id: 1076412
- Matching level: species
doi: 10.13145/bacdive133737.20240510.9
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Negativicutes
- order: Selenomonadales
- family: Sporomusaceae
- genus: Pelosinus
- species: Pelosinus defluvii
- full scientific name: Pelosinus defluvii Moe et al. 2012
@ref: 30339
domain: Bacteria
phylum: Firmicutes
class: Negativicutes
order: Selenomonadales
family: Sporomusaceae
genus: Pelosinus
species: Pelosinus defluvii
strain designation: SHI-1
type strain: yes
Morphology
cell morphology
- @ref: 30339
- gram stain: negative
- cell length: 4.5 µm
- cell width: 0.8 µm
- cell shape: rod-shaped
- motility: yes
pigmentation
- @ref: 30339
- production: yes
Culture and growth conditions
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 30339 | positive | growth | 10-42 |
| 30339 | positive | optimum | 33 |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 30339 | positive | growth | 5.5-8.5 | alkaliphile |
| 30339 | positive | optimum | 7.25 |
Physiology and metabolism
oxygen tolerance
- @ref: 30339
- oxygen tolerance: anaerobe
spore formation
- @ref: 30339
- spore formation: yes
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 30339 | 28757 | fructose | + | carbon source |
| 30339 | 17234 | glucose | + | carbon source |
| 30339 | 17754 | glycerol | + | carbon source |
| 30339 | 15361 | pyruvate | + | carbon source |
Isolation, sampling and environmental information
isolation
- @ref: 30339
- sample type: Contaminated groundwater
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Contamination | |
| #Environmental | #Aquatic | #Groundwater |
Sequence information
16S sequences
- @ref: 30339
- description: Pelosinus defluvii strain SHI-1 clone 2 16S ribosomal RNA gene, partial sequence
- accession: JF750003
- length: 1650
- database: nuccore
- NCBI tax ID: 1076412
GC content
- @ref: 30339
- GC-content: 39.2
External links
@ref: 30339
culture collection no.: NRRL Y-59407, LMG 25549
literature
- topic: Phylogeny
- Pubmed-ID: 21828012
- title: Pelosinus defluvii sp. nov., isolated from chlorinated solvent-contaminated groundwater, emended description of the genus Pelosinus and transfer of Sporotalea propionica to Pelosinus propionicus comb. nov.
- authors: Moe WM, Stebbing RE, Rao JU, Bowman KS, Nobre MF, da Costa MS, Rainey FA
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.033753-0
- year: 2011
- mesh: Base Composition, DNA, Bacterial/genetics, Groundwater/analysis/*microbiology, Halogenation, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Veillonellaceae/*classification/genetics/*isolation & purification/metabolism, Water Pollution, Chemical/analysis
- topic2: Genetics
Reference
| @id | authors | title | doi/url | ID_cross_reference | pubmed |
|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
| 30339 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 26680 | 28776041 |