Strain identifier
BacDive ID: 133729
Type strain: 
Species: Mesonia ostreae
Strain Designation: T-y2
Strain history: <- JH Yoon, KRIBB
NCBI tax ID(s): 861110 (species)
version 8.1 (current version)
General
@ref: 30309
BacDive-ID: 133729
keywords: 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped
description: Mesonia ostreae T-y2 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from seawater.
NCBI tax id
- NCBI tax id: 861110
- Matching level: species
strain history
- @ref: 67771
- history: <- JH Yoon, KRIBB
doi: 10.13145/bacdive133729.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Flavobacteriia
- order: Flavobacteriales
- family: Flavobacteriaceae
- genus: Mesonia
- species: Mesonia ostreae
- full scientific name: Mesonia ostreae Lee et al. 2012
@ref: 30309
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Flavobacteriaceae
genus: Mesonia
species: Mesonia ostreae
strain designation: T-y2
type strain: yes
Morphology
cell morphology
| @ref | gram stain | cell length | cell width | cell shape | motility |
|---|---|---|---|---|---|
| 30309 | negative | 2.5 µm | 0.5 µm | rod-shaped | no |
| 67771 | rod-shaped | ||||
| 67771 | negative |
colony morphology
- @ref: 62445
- incubation period: 1 day
pigmentation
- @ref: 30309
- production: yes
Culture and growth conditions
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 30309 | positive | growth | 04-31 | |
| 30309 | positive | optimum | 25 | mesophilic |
| 62445 | positive | growth | 30 | mesophilic |
| 67771 | positive | growth | 25 | mesophilic |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 30309 | positive | growth | 5.5-8.5 | alkaliphile |
| 30309 | positive | optimum | 7.25 |
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance |
|---|---|
| 30309 | aerobe |
| 62445 | aerobe |
| 67771 | aerobe |
spore formation
| @ref | spore formation |
|---|---|
| 30309 | no |
| 67771 | no |
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 30309 | NaCl | positive | growth | 0-12 % |
| 30309 | NaCl | positive | optimum | 2 % |
observation
- @ref: 67771
- observation: quinones: MK-6
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 30309 | catalase | + | 1.11.1.6 |
| 30309 | cytochrome oxidase | + | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | sampling date | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|---|
| 30309 | seawater | |||||
| 62445 | Seawater,oyster farm | 2008 | South sea | Republic of Korea | KOR | Asia |
| 67771 | From seawater of oyster farm | the South Sea | Republic of Korea | KOR | Asia |
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
- Cat3: #Marine
taxonmaps
- @ref: 69479
- File name: preview.99_78589.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_52;96_4071;97_34011;98_43793;99_78589&stattab=map
- Last taxonomy: Mesonia ostreae subclade
- 16S sequence: HM234095
- Sequence Identity:
- Total samples: 327
- soil counts: 31
- aquatic counts: 234
- animal counts: 49
- plant counts: 13
Sequence information
16S sequences
- @ref: 30309
- description: Mesonia ostreae strain T-y2 16S ribosomal RNA gene, partial sequence
- accession: HM234095
- length: 1447
- database: nuccore
- NCBI tax ID: 861110
GC content
| @ref | GC-content | method |
|---|---|---|
| 30309 | 42.1 | |
| 67771 | 42.1 | high performance liquid chromatography (HPLC) |
External links
@ref: 30309
culture collection no.: KCTC 23500, CCUG 60802
literature
- topic: Phylogeny
- Pubmed-ID: 21984667
- title: Mesonia ostreae sp. nov., isolated from seawater of an oyster farm, and emended description of the genus Mesonia.
- authors: Lee SY, Lee MH, Yoon JH
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.033175-0
- year: 2011
- mesh: Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Flavobacteriaceae/*classification/genetics/isolation & purification, Molecular Sequence Data, Ostreidae, Phospholipids/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seawater/*microbiology, Sequence Analysis, DNA, Water Microbiology
- topic2: Genetics
Reference
| @id | authors | title | doi/url | ID_cross_reference | pubmed | catalogue |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 30309 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 26650 | 28776041 | |
| 62445 | Curators of the CCUG | https://www.ccug.se/strain?id=60802 | Culture Collection University of Gothenburg (CCUG) (CCUG 60802) | |||
| 67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |