Strain identifier

BacDive ID: 133725

Type strain: Yes

Species: Aquimarina mytili

Strain Designation: PSC33

Culture col. no.: KCTC 23302, JCM 17454

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 5.0 (current version):
version 4.1:
version 4.0:
version 3.0:
version 2.1:
version 5.0 (current version)

General

@ref: 30295

BacDive-ID: 133725

keywords: motile, gram-negative, aerobe, Bacteria, 16S sequence, rod-shaped

description: Aquimarina mytili PSC33 is an aerobe, gram-negative, motile bacterium that was isolated from Mussel.

doi: 10.13145/bacdive133725.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidetes
  • domain: Bacteria
  • phylum: Bacteroidetes
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Aquimarina
  • species: Aquimarina mytili
  • full scientific name: Aquimarina mytili Park et al. 2012

@ref: 30295

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Aquimarina

species: Aquimarina mytili

strain designation: PSC33

type strain: yes

Morphology

cell morphology

  • @ref: 30295
  • gram stain: negative
  • cell length: 2.1 µm
  • cell width: 0.35 µm
  • cell shape: rod-shaped
  • motility: yes
  • flagellum arrangement: gliding

pigmentation

  • @ref: 30295
  • production: yes

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
30295positivegrowth15-37
30295positiveoptimum27.5mesophilic

culture pH

  • @ref: 30295
  • ability: positive
  • type: growth
  • pH: 07-09

Physiology and metabolism

oxygen tolerance

  • @ref: 30295
  • oxygen tolerance: aerobe

halophily

@refsaltgrowthtested relationconcentration
30295NaClpositivegrowth1-4 %
30295NaClpositiveoptimum2 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
302954853esculin+hydrolysis
3029517632nitrate+reduction

enzymes

@refvalueactivityec
30295acid phosphatase+3.1.3.2
30295alkaline phosphatase+3.1.3.1
30295catalase+1.11.1.6
30295gelatinase+
30295cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

  • @ref: 30295
  • sample type: Mussel

isolation source categories

  • Cat1: #Host
  • Cat2: #Invertebrates (Other)
  • Cat3: #Mollusca

Sequence information

16S sequences

  • @ref: 30295
  • description: Aquimarina mytili strain PSC33 16S ribosomal RNA gene, partial sequence
  • accession: HM998910
  • length: 1429
  • database: nuccore
  • NCBI tax ID: 874423

GC content

  • @ref: 30295
  • GC-content: 37.9

External links

@ref: 30295

culture collection no.: KCTC 23302, JCM 17454

straininfo link

@refpassport
20218http://www.straininfo.net/strains/872590
20218http://www.straininfo.net/strains/872589

Reference

@idauthorstitledoi/urljournalpubmedID_cross_reference
20215D.Gleim, M.Kracht, N.Weiss et. al.Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes sincehttp://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.html
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.StrainInfo introduces electronic passports for microorganisms.10.1016/j.syapm.2013.11.002Syst Appl Microbiol. 37: 42-50 201424321274
2663610.1099/ijs.0.032904-0
30295Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-1726636