Strain identifier

BacDive ID: 133725

Type strain: Yes

Species: Aquimarina mytili

Strain Designation: PSC33

Strain history: <- Chi Nam Seong, Sunchon Natl. Univ.

NCBI tax ID(s): 874423 (species)

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General

@ref: 30295

BacDive-ID: 133725

keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, motile, rod-shaped

description: Aquimarina mytili PSC33 is an aerobe, Gram-negative, motile bacterium that was isolated from Mussel.

NCBI tax id

  • NCBI tax id: 874423
  • Matching level: species

strain history

@refhistory
67770C. N. Seong PSC33.
67771<- Chi Nam Seong, Sunchon Natl. Univ.

doi: 10.13145/bacdive133725.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Aquimarina
  • species: Aquimarina mytili
  • full scientific name: Aquimarina mytili Park et al. 2012

@ref: 30295

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Aquimarina

species: Aquimarina mytili

strain designation: PSC33

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityflagellum arrangementconfidence
30295negative2.1 µm0.35 µmrod-shapedyesgliding
67771rod-shapedyesgliding
67771negative
69480negative99.996

pigmentation

  • @ref: 30295
  • production: yes

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
30295positivegrowth15-37
30295positiveoptimum27.5mesophilic
67770positivegrowth25mesophilic
67771positivegrowth25-30mesophilic

culture pH

  • @ref: 30295
  • ability: positive
  • type: growth
  • pH: 07-09
  • PH range: alkaliphile

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
30295aerobe
67771aerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.998

halophily

@refsaltgrowthtested relationconcentration
30295NaClpositivegrowth1-4 %
30295NaClpositiveoptimum2 %

observation

@refobservation
67770quinones: MK-6
67771quinones: MK-6

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
302954853esculin+hydrolysis
3029517632nitrate+reduction

enzymes

@refvalueactivityec
30295acid phosphatase+3.1.3.2
30295alkaline phosphatase+3.1.3.1
30295catalase+1.11.1.6
30295gelatinase+
30295cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typehost speciescountryorigin.countrycontinentgeographic locationlatitudelongitude
30295Mussel
67770Mussel Mytilus coruscusMytilus coruscusRepublic of KoreaKORAsia
67771From gut content obtained from a mussel, `Mytilus coruscus`Republic of KoreaKORAsiaGwangyang Bay in the South Sea34.8833127.767

isolation source categories

  • Cat1: #Host
  • Cat2: #Invertebrates (Other)
  • Cat3: #Mollusca

taxonmaps

  • @ref: 69479
  • File name: preview.99_19904.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_52;96_10139;97_12229;98_15043;99_19904&stattab=map
  • Last taxonomy: Aquimarina mytili subclade
  • 16S sequence: HM998910
  • Sequence Identity:
  • Total samples: 89
  • aquatic counts: 87
  • animal counts: 1
  • plant counts: 1

Sequence information

16S sequences

  • @ref: 30295
  • description: Aquimarina mytili strain PSC33 16S ribosomal RNA gene, partial sequence
  • accession: HM998910
  • length: 1429
  • database: nuccore
  • NCBI tax ID: 874423

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Aquimarina mytili KCTC 23302GCA_016735115contigncbi874423
66792Aquimarina mytili strain KCTC 23302874423.3wgspatric874423

GC content

  • @ref: 67771
  • GC-content: 37.9

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno91.949no
flagellatedno94.514yes
gram-positiveno97.608yes
anaerobicno99.663yes
halophileno65.734no
spore-formingno93.79no
thermophileno98.707no
glucose-utilyes82.154no
aerobicyes92.9yes
glucose-fermentno90.988no

External links

@ref: 30295

culture collection no.: KCTC 23302, JCM 17454

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny22003036Aquimarina mytili sp. nov., isolated from the gut microflora of a mussel, Mytilus coruscus, and emended description of Aquimarina macrocephali.Park SC, Choe HN, Baik KS, Seong CNInt J Syst Evol Microbiol10.1099/ijs.0.032904-02011Animals, Bacterial Typing Techniques, Base Composition, Bivalvia/*microbiology, DNA, Bacterial/genetics, Fatty Acids/analysis, Flavobacteriaceae/*classification/genetics/isolation & purification, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/analysisGenetics
Phylogeny22771683Aquimarina longa sp. nov., isolated from seawater, and emended description of Aquimarina muelleri.Yu T, Yin Q, Song X, Zhao R, Shi X, Zhang XHInt J Syst Evol Microbiol10.1099/ijs.0.041509-02012Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Flavobacteriaceae/*classification/genetics/isolation & purification, Molecular Sequence Data, Pacific Ocean, Phosphatidylethanolamines/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/analysis, Water MicrobiologyGenetics
Phylogeny29458468Aquimarina spongiicola sp. nov., isolated from spongin.Choi KD, Lee GE, Park JSInt J Syst Evol Microbiol10.1099/ijsem.0.0025752018Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/genetics/isolation & purification, Phospholipids/chemistry, *Phylogeny, Porifera/*microbiology, RNA, Ribosomal, 16S/genetics, Seawater/microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorstitledoi/urlID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
30295Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172663628776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1