Strain identifier

BacDive ID: 133724

Type strain: Yes

Species: Muricauda beolgyonensis

Strain Designation: BB-My12

Strain history: <- JH Yoon, KRIBB

NCBI tax ID(s): 864064 (species)

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General

@ref: 30288

BacDive-ID: 133724

keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped

description: Muricauda beolgyonensis BB-My12 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from marine sediment.

NCBI tax id

  • NCBI tax id: 864064
  • Matching level: species

strain history

  • @ref: 67771
  • history: <- JH Yoon, KRIBB

doi: 10.13145/bacdive133724.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Muricauda
  • species: Muricauda beolgyonensis
  • full scientific name: Muricauda beolgyonensis Lee et al. 2012

  • synonyms

    • @ref: 20215
    • synonym: Allomuricauda beolgyonensis

@ref: 30288

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Muricauda

species: Muricauda beolgyonensis

strain designation: BB-My12

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
30288negative3.5 µm0.6 µmrod-shapedno
67771rod-shaped
67771negative
69480negative99.989

colony morphology

  • @ref: 62443
  • incubation period: 1-2 days

pigmentation

  • @ref: 30288
  • production: yes

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
30288positivegrowth10-40
30288positiveoptimum37mesophilic
62443positivegrowth30mesophilic
67771positivegrowth37mesophilic

culture pH

@refabilitytypepH
30288positivegrowth5.5-7.5
30288positiveoptimum7.25

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
30288aerobe
62443aerobe
67771aerobe

spore formation

@refspore formationconfidence
30288no
67771no
69481no100
69480no99.999

halophily

@refsaltgrowthtested relationconcentration
30288NaClpositivegrowth0.5-8 %
30288NaClpositiveoptimum2.50 %

observation

  • @ref: 67771
  • observation: quinones: MK-6

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3028817057cellobiose+carbon source
3028828757fructose+carbon source
3028817234glucose+carbon source
3028817306maltose+carbon source
3028837684mannose+carbon source
3028817814salicin+carbon source
3028830031succinate+carbon source
3028817992sucrose+carbon source
3028827082trehalose+carbon source

enzymes

@refvalueactivityec
30288catalase+1.11.1.6
30288cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typesampling dategeographic locationcountryorigin.countrycontinent
30288marine sediment
62443Tidal flat sediment2009BeolgyoRepublic of KoreaKORAsia
67771From tidal flat sedimentBoseongRepublic of KoreaKORAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Aquatic#Sediment

taxonmaps

  • @ref: 69479
  • File name: preview.99_58736.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15779;96_885;97_4056;98_41797;99_58736&stattab=map
  • Last taxonomy: Muricauda beolgyonensis subclade
  • 16S sequence: HM355805
  • Sequence Identity:
  • Total samples: 171
  • soil counts: 4
  • aquatic counts: 160
  • animal counts: 5
  • plant counts: 2

Sequence information

16S sequences

  • @ref: 30288
  • description: Muricauda beolgyonensis strain BB-My12 16S ribosomal RNA gene, partial sequence
  • accession: HM355805
  • length: 1449
  • database: nuccore
  • NCBI tax ID: 864064

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Allomuricauda beolgyonensis KCTC 23501GCA_003992615scaffoldncbi864064
66792Muricauda beolgyonensis strain KCTC 23501864064.3wgspatric864064
66792Muricauda beolgyonensis KCTC 235012894668856draftimg864064

GC content

@refGC-content
3028845
6777145.0

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno91.484yes
flagellatedno95.644no
gram-positiveno98.86no
anaerobicno98.305yes
aerobicyes80.4yes
halophileno87.209no
spore-formingno96.925yes
thermophileno98.151no
glucose-utilyes85.409no
glucose-fermentno89.124no

External links

@ref: 30288

culture collection no.: KCTC 23501, CCUG 60800

straininfo link

  • @ref: 91572
  • straininfo: 412246

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny21724956Muricauda beolgyonensis sp. nov., isolated from a tidal flat.Lee SY, Park S, Oh TK, Yoon JHInt J Syst Evol Microbiol10.1099/ijs.0.032581-02011Bacterial Typing Techniques, Base Composition, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Flavobacteriaceae/*classification/genetics/*isolation & purification/physiology, Geologic Sediments/*microbiology, Hydrogen-Ion Concentration, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Sodium Chloride/metabolism, Temperature, Vitamin K 2/analysisGenetics
Phylogeny23291883Muricauda taeanensis sp. nov., isolated from a marine tidal flat.Kim JM, Jin HM, Jeon COInt J Syst Evol Microbiol10.1099/ijs.0.047647-02013Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Flavobacteriaceae/*classification/genetics/isolation & purification, Geologic Sediments/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phosphatidylethanolamines/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/analysisGenetics
Phylogeny31909707Muricauda alvinocaridis sp. nov., isolated from shrimp gill from the Okinawa Trough.Liu L, Yu M, Zhou S, Fu T, Sun W, Wang L, Zhang XHInt J Syst Evol Microbiol10.1099/ijsem.0.0039532020Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Decapoda/*microbiology, Fatty Acids/chemistry, Flavobacteriaceae/*classification/isolation & purification, Gills/*microbiology, Nucleic Acid Hybridization, Pacific Ocean, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryTranscriptome
Phylogeny32721276Muricauda ochracea sp. nov., isolated from a tidal flat in the Republic of Korea.Kim D, Yoo Y, Khim JS, Yang D, Pathiraja D, Choi IG, Kim JJInt J Syst Evol Microbiol10.1099/ijsem.0.0043122020Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/isolation & purification, Geologic Sediments/*microbiology, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryTranscriptome
Phylogeny33095696Muricauda maritima sp. nov., Muricauda aequoris sp. nov. and Muricauda oceanensis sp. nov., three marine bacteria isolated from seawater.Guo LL, Wu D, Sun C, Cheng H, Xu XW, Wu M, Wu YHInt J Syst Evol Microbiol10.1099/ijsem.0.0045222020Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/isolation & purification, Nucleic Acid Hybridization, Pacific Ocean, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryTranscriptome
Phylogeny33709904Muricauda sediminis sp. nov., isolated from western Pacific Ocean sediment.Zhu S, Xue Z, Huang Y, Chen X, Ren N, Chen T, Chen Y, Yang J, Chen JInt J Syst Evol Microbiol10.1099/ijsem.0.0047572021

Reference

@idauthorstitledoi/urlID_cross_referencepubmedcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
30288Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172662928776041
62443Curators of the CCUGhttps://www.ccug.se/strain?id=60800Culture Collection University of Gothenburg (CCUG) (CCUG 60800)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
91572Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID412246.1