Strain identifier

BacDive ID: 133679

Type strain: Yes

Species: Mucilaginibacter angelicae

Strain Designation: GG-w14

NCBI tax ID(s): 869718 (species)

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General

@ref: 30126

BacDive-ID: 133679

keywords: 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped

description: Mucilaginibacter angelicae GG-w14 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from Rhizosphere of Angelica polymorpha.

NCBI tax id

  • NCBI tax id: 869718
  • Matching level: species

doi: 10.13145/bacdive133679.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Sphingobacteriia
  • order: Sphingobacteriales
  • family: Sphingobacteriaceae
  • genus: Mucilaginibacter
  • species: Mucilaginibacter angelicae
  • full scientific name: Mucilaginibacter angelicae Kim et al. 2012

@ref: 30126

domain: Bacteria

phylum: Bacteroidetes

class: Sphingobacteriia

order: Sphingobacteriales

family: Sphingobacteriaceae

genus: Mucilaginibacter

species: Mucilaginibacter angelicae

strain designation: GG-w14

type strain: yes

Morphology

cell morphology

  • @ref: 30126
  • gram stain: negative
  • cell length: 1.1-1.5 µm
  • cell width: 0.6-0.8 µm
  • cell shape: rod-shaped
  • motility: no

pigmentation

  • @ref: 30126
  • production: yes

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
30126positivegrowth04-35
30126positiveoptimum25-30mesophilic

culture pH

@refabilitytypepH
30126positivegrowth5.0-8.0
30126positiveoptimum6.0-7.0

Physiology and metabolism

oxygen tolerance

  • @ref: 30126
  • oxygen tolerance: aerobe

halophily

  • @ref: 30126
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-1 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3012622599arabinose+carbon source
3012617057cellobiose+carbon source
3012633984fucose+carbon source
3012628260galactose+carbon source
3012617234glucose+carbon source
3012628087glycogen+carbon source
3012617716lactose+carbon source
3012617306maltose+carbon source
3012637684mannose+carbon source
3012628053melibiose+carbon source
3012616634raffinose+carbon source
3012617992sucrose+carbon source
3012627082trehalose+carbon source
3012653424tween 20+carbon source
3012653423tween 40+carbon source
3012653425tween 60+carbon source
3012653426tween 80+carbon source
3012618222xylose+carbon source
301264853esculin+hydrolysis

enzymes

@refvalueactivityec
30126acid phosphatase+3.1.3.2
30126alkaline phosphatase+3.1.3.1
30126catalase+1.11.1.6
30126gelatinase+
30126cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

  • @ref: 30126
  • sample type: Rhizosphere of Angelica polymorpha

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Herbaceous plants (Grass,Crops)
#Host Body-Site#Plant#Rhizosphere

Sequence information

16S sequences

  • @ref: 30126
  • description: Mucilaginibacter angelicae strain GG-w14 16S ribosomal RNA gene, partial sequence
  • accession: HM627214
  • length: 1443
  • database: nuccore
  • NCBI tax ID: 869718

GC content

  • @ref: 30126
  • GC-content: 42.5

External links

@ref: 30126

culture collection no.: KCTC 23250, NCAIM B02415

literature

  • topic: Phylogeny
  • Pubmed-ID: 21317281
  • title: Mucilaginibacter angelicae sp. nov., isolated from the rhizosphere of Angelica polymorpha Maxim.
  • authors: Kim BC, Poo H, Lee KH, Kim MN, Kwon OY, Shin KS
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.029728-0
  • year: 2011
  • mesh: Angelica/*microbiology, Bacterial Typing Techniques, Bacteroidetes/*classification/genetics/*isolation & purification/physiology, Base Composition, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Hydrogen-Ion Concentration, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Plant Roots/*microbiology, RNA, Ribosomal, 16S/genetics, Rhizosphere, Sequence Analysis, DNA, Sodium Chloride/metabolism, Temperature, Vitamin K 2/analysis
  • topic2: Genetics

Reference

@idauthorstitledoi/urlID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
30126Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172647928776041