Strain identifier

BacDive ID: 133677

Type strain: Yes

Species: Qipengyuania pelagi

Strain Designation: UST081027-248

Strain history: O. O. Lee UST081027-248.

NCBI tax ID(s): 994320 (species)

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General

@ref: 30116

BacDive-ID: 133677

keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped

description: Qipengyuania pelagi UST081027-248 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from seawater.

NCBI tax id

  • NCBI tax id: 994320
  • Matching level: species

strain history

  • @ref: 67770
  • history: O. O. Lee UST081027-248.

doi: 10.13145/bacdive133677.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Sphingomonadales
  • family: Erythrobacteraceae
  • genus: Qipengyuania
  • species: Qipengyuania pelagi
  • full scientific name: Qipengyuania pelagi (Wu et al. 2012) Xu et al. 2020

  • synonyms

    • @ref: 20215
    • synonym: Erythrobacter pelagi

@ref: 30116

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Sphingomonadales

family: Erythrobacteraceae

genus: Erythrobacter

species: Erythrobacter pelagi

strain designation: UST081027-248

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
30116negative2.75 µm0.55 µmrod-shapedno
69480negative99.997

pigmentation

  • @ref: 30116
  • production: yes

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
30116positivegrowth10-42
30116positiveoptimum28mesophilic
67770positivegrowth30mesophilic

culture pH

@refabilitytypepHPH range
30116positivegrowth05-10alkaliphile
30116positiveoptimum8.5

Physiology and metabolism

oxygen tolerance

  • @ref: 30116
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
30116no
69481no100
69480no99.992

halophily

@refsaltgrowthtested relationconcentration
30116NaClpositivegrowth1-10 %
30116NaClpositiveoptimum2.50 %

observation

  • @ref: 67770
  • observation: quinones: Q-10

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3011616449alanine+carbon source
3011623652dextrin+carbon source
3011629987glutamate+carbon source
3011617754glycerol+carbon source
3011617306maltose+carbon source
3011615361pyruvate+carbon source
3011630031succinate+carbon source
3011617992sucrose+carbon source
3011617632nitrate+reduction

metabolite production

  • @ref: 30116
  • Chebi-ID: 35581
  • metabolite: indole
  • production: yes

metabolite tests

  • @ref: 30116
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: +

enzymes

@refvalueactivityec
30116acid phosphatase+3.1.3.2
30116alkaline phosphatase+3.1.3.1
30116catalase+1.11.1.6
30116cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample type
30116seawater
67770Shallow seawater from the middle of the Red Sea

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Marine

Sequence information

16S sequences

  • @ref: 30116
  • description: Erythrobacter pelagi strain UST081027-248 16S ribosomal RNA gene, partial sequence
  • accession: HQ203045
  • length: 1453
  • database: nuccore
  • NCBI tax ID: 994320

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Erythrobacter pelagi strain JCM 17468994320.4wgspatric994320
67770Qipengyuania pelagi JCM 17468GCA_009827295contigncbi994320

GC content

@refGC-contentmethod
3011660.4
6777060.4high performance liquid chromatography (HPLC)
6777064.2genome sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes63.078no
flagellatedno88.55yes
gram-positiveno97.06yes
anaerobicno99.222yes
halophileno85.252no
spore-formingno94.621yes
glucose-utilyes82.397no
aerobicyes95.738yes
thermophileno97.407no
glucose-fermentno92.612no

External links

@ref: 30116

culture collection no.: JCM 17468, NRRL 59511

literature

  • topic: Phylogeny
  • Pubmed-ID: 34047831
  • title: Qipengyuania soli sp. nov., Isolated from Mangrove Soil.
  • authors: Liu Y, Pei T, Deng MR, Zhu H
  • journal: Curr Microbiol
  • DOI: 10.1007/s00284-021-02538-1
  • year: 2021
  • mesh: Bacterial Typing Techniques, DNA, Bacterial/genetics, Fatty Acids, *Phospholipids, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urlID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
30116Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172647128776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1