Strain identifier

BacDive ID: 133676

Type strain: Yes

Species: Tropicimonas aquimaris

Strain Designation: DPG-21

Strain history: <- JH Yoon, KRIBB

NCBI tax ID(s): 914152 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 30097

BacDive-ID: 133676

keywords: 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped

description: Tropicimonas aquimaris DPG-21 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from seawater.

NCBI tax id

  • NCBI tax id: 914152
  • Matching level: species

strain history

  • @ref: 67771
  • history: <- JH Yoon, KRIBB

doi: 10.13145/bacdive133676.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodobacterales
  • family: Roseobacteraceae
  • genus: Tropicimonas
  • species: Tropicimonas aquimaris
  • full scientific name: Tropicimonas aquimaris Oh et al. 2012

@ref: 30097

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhodobacterales

family: Rhodobacteraceae

genus: Tropicimonas

species: Tropicimonas aquimaris

strain designation: DPG-21

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
30097negative1.2-15.0 µm0.8-1.2 µmrod-shapedno
67771negative

colony morphology

  • @ref: 62340
  • incubation period: 3 days

pigmentation

  • @ref: 30097
  • production: yes

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
30097positivegrowth15-40
30097positiveoptimum30mesophilic
62340positivegrowth30mesophilic
67771positivegrowth30mesophilic

culture pH

  • @ref: 30097
  • ability: positive
  • type: optimum
  • pH: 07-08

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
30097aerobe
62340aerobe
67771aerobe

halophily

  • @ref: 30097
  • salt: NaCl
  • growth: positive
  • tested relation: optimum
  • concentration: 2 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3009726546rhamnose+carbon source
3009717632nitrate+reduction

enzymes

@refvalueactivityec
30097alkaline phosphatase+3.1.3.1
30097alpha-galactosidase+3.2.1.22

Isolation, sampling and environmental information

isolation

@refsample typesampling dategeographic locationcountryorigin.countrycontinent
30097seawater
62340Seawater2009Geoje,South SeaRepublic of KoreaKORAsia
67771From seawaterGeoje-doRepublic of KoreaKORAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Marine

taxonmaps

  • @ref: 69479
  • File name: preview.99_145303.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_19;96_5771;97_6945;98_8598;99_145303&stattab=map
  • Last taxonomy: Tropicimonas aquimaris
  • 16S sequence: HQ340608
  • Sequence Identity:
  • Total samples: 478
  • soil counts: 3
  • aquatic counts: 440
  • animal counts: 31
  • plant counts: 4

Sequence information

16S sequences

  • @ref: 30097
  • description: Tropicimonas aquimaris strain DPG-21 16S ribosomal RNA gene, partial sequence
  • accession: HQ340608
  • length: 1390
  • database: nuccore
  • NCBI tax ID: 914152

GC content

  • @ref: 30097
  • GC-content: 69.6

External links

@ref: 30097

culture collection no.: KCTC 23424, CCUG 60524

straininfo link

  • @ref: 91554
  • straininfo: 412138

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny21551334Tropicimonas aquimaris sp. nov., isolated from seawater, and emended description of the genus Tropicimonas Harwati et al. 2009.Oh KH, Choi WC, Jung YT, Kang SJ, Oh TK, Yoon JHInt J Syst Evol Microbiol10.1099/ijs.0.029371-02011Aerobiosis, Bacterial Typing Techniques, Base Composition, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Hydrogen-Ion Concentration, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Rhodobacteraceae/*classification/genetics/*isolation & purification/physiology, Seawater/*microbiology, Sequence Analysis, DNA, Sodium Chloride/metabolism, Temperature, Ubiquinone/analysisGenetics
Phylogeny22140172Tropicimonas sediminicola sp. nov., isolated from marine sediment.Shin NR, Roh SW, Kim MS, Yun B, Whon TW, Kim YO, Bae JWInt J Syst Evol Microbiol10.1099/ijs.0.037929-02011Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Geologic Sediments/*microbiology, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Rhodobacteraceae/*classification/genetics/isolation & purification, Sequence Analysis, DNA, Ubiquinone/analysisGenetics
Phylogeny26297482Maritimibacter lacisalsi sp. nov., isolated from a salt lake, and emended description of the genus Maritimibacter Lee et al. 2007.Zhong ZP, Liu Y, Zhou YG, Liu HC, Wang F, Liu ZPInt J Syst Evol Microbiol10.1099/ijsem.0.0004372015Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Lakes/*microbiology, Molecular Sequence Data, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rhodobacteraceae/*classification/genetics/isolation & purification, *Salinity, Sequence Analysis, DNA, Ubiquinone/analogs & derivatives/chemistryGenetics

Reference

@idauthorstitledoi/urlID_cross_referencepubmedcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
30097Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172645328776041
62340Curators of the CCUGhttps://www.ccug.se/strain?id=60524Culture Collection University of Gothenburg (CCUG) (CCUG 60524)
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
91554Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID412138.1