Strain identifier
BacDive ID: 133676
Type strain:
Species: Tropicimonas aquimaris
Strain Designation: DPG-21
Strain history: <- JH Yoon, KRIBB
NCBI tax ID(s): 914152 (species)
version 8.1 (current version)
General
@ref: 30097
BacDive-ID: 133676
keywords: 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped
description: Tropicimonas aquimaris DPG-21 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from seawater.
NCBI tax id
- NCBI tax id: 914152
- Matching level: species
strain history
- @ref: 67771
- history: <- JH Yoon, KRIBB
doi: 10.13145/bacdive133676.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodobacterales
- family: Roseobacteraceae
- genus: Tropicimonas
- species: Tropicimonas aquimaris
- full scientific name: Tropicimonas aquimaris Oh et al. 2012
@ref: 30097
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhodobacterales
family: Rhodobacteraceae
genus: Tropicimonas
species: Tropicimonas aquimaris
strain designation: DPG-21
type strain: yes
Morphology
cell morphology
@ref | gram stain | cell length | cell width | cell shape | motility |
---|---|---|---|---|---|
30097 | negative | 1.2-15.0 µm | 0.8-1.2 µm | rod-shaped | no |
67771 | negative |
colony morphology
- @ref: 62340
- incubation period: 3 days
pigmentation
- @ref: 30097
- production: yes
Culture and growth conditions
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
30097 | positive | growth | 15-40 | |
30097 | positive | optimum | 30 | mesophilic |
62340 | positive | growth | 30 | mesophilic |
67771 | positive | growth | 30 | mesophilic |
culture pH
- @ref: 30097
- ability: positive
- type: optimum
- pH: 07-08
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
30097 | aerobe |
62340 | aerobe |
67771 | aerobe |
halophily
- @ref: 30097
- salt: NaCl
- growth: positive
- tested relation: optimum
- concentration: 2 %
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
30097 | 26546 | rhamnose | + | carbon source |
30097 | 17632 | nitrate | + | reduction |
enzymes
@ref | value | activity | ec |
---|---|---|---|
30097 | alkaline phosphatase | + | 3.1.3.1 |
30097 | alpha-galactosidase | + | 3.2.1.22 |
Isolation, sampling and environmental information
isolation
@ref | sample type | sampling date | geographic location | country | origin.country | continent |
---|---|---|---|---|---|---|
30097 | seawater | |||||
62340 | Seawater | 2009 | Geoje,South Sea | Republic of Korea | KOR | Asia |
67771 | From seawater | Geoje-do | Republic of Korea | KOR | Asia |
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
- Cat3: #Marine
taxonmaps
- @ref: 69479
- File name: preview.99_145303.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_19;96_5771;97_6945;98_8598;99_145303&stattab=map
- Last taxonomy: Tropicimonas aquimaris
- 16S sequence: HQ340608
- Sequence Identity:
- Total samples: 478
- soil counts: 3
- aquatic counts: 440
- animal counts: 31
- plant counts: 4
Sequence information
16S sequences
- @ref: 30097
- description: Tropicimonas aquimaris strain DPG-21 16S ribosomal RNA gene, partial sequence
- accession: HQ340608
- length: 1390
- database: nuccore
- NCBI tax ID: 914152
GC content
- @ref: 30097
- GC-content: 69.6
External links
@ref: 30097
culture collection no.: KCTC 23424, CCUG 60524
straininfo link
- @ref: 91554
- straininfo: 412138
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 21551334 | Tropicimonas aquimaris sp. nov., isolated from seawater, and emended description of the genus Tropicimonas Harwati et al. 2009. | Oh KH, Choi WC, Jung YT, Kang SJ, Oh TK, Yoon JH | Int J Syst Evol Microbiol | 10.1099/ijs.0.029371-0 | 2011 | Aerobiosis, Bacterial Typing Techniques, Base Composition, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Hydrogen-Ion Concentration, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Rhodobacteraceae/*classification/genetics/*isolation & purification/physiology, Seawater/*microbiology, Sequence Analysis, DNA, Sodium Chloride/metabolism, Temperature, Ubiquinone/analysis | Genetics |
Phylogeny | 22140172 | Tropicimonas sediminicola sp. nov., isolated from marine sediment. | Shin NR, Roh SW, Kim MS, Yun B, Whon TW, Kim YO, Bae JW | Int J Syst Evol Microbiol | 10.1099/ijs.0.037929-0 | 2011 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Geologic Sediments/*microbiology, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Rhodobacteraceae/*classification/genetics/isolation & purification, Sequence Analysis, DNA, Ubiquinone/analysis | Genetics |
Phylogeny | 26297482 | Maritimibacter lacisalsi sp. nov., isolated from a salt lake, and emended description of the genus Maritimibacter Lee et al. 2007. | Zhong ZP, Liu Y, Zhou YG, Liu HC, Wang F, Liu ZP | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000437 | 2015 | Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Lakes/*microbiology, Molecular Sequence Data, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rhodobacteraceae/*classification/genetics/isolation & purification, *Salinity, Sequence Analysis, DNA, Ubiquinone/analogs & derivatives/chemistry | Genetics |
Reference
@id | authors | title | doi/url | ID_cross_reference | pubmed | catalogue |
---|---|---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
30097 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 26453 | 28776041 | |
62340 | Curators of the CCUG | https://www.ccug.se/strain?id=60524 | Culture Collection University of Gothenburg (CCUG) (CCUG 60524) | |||
67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | ||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
91554 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID412138.1 |