Strain identifier

BacDive ID: 133676

Type strain: Yes

Species: Tropicimonas aquimaris

Strain Designation: DPG-21

Culture col. no.: KCTC 23424, CCUG 60524

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 5.0 (current version):
version 4.1:
version 4.0:
version 3.0:
version 2.1:
version 5.0 (current version)

General

@ref: 30097

BacDive-ID: 133676

keywords: rod-shaped, gram-negative, aerobe, Bacteria, 16S sequence

description: Tropicimonas aquimaris DPG-21 is an aerobe, gram-negative, rod-shaped bacterium that was isolated from seawater.

doi: 10.13145/bacdive133676.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/proteobacteria
  • domain: Bacteria
  • phylum: Proteobacteria
  • class: Alphaproteobacteria
  • order: Rhodobacterales
  • family: Rhodobacteraceae
  • genus: Tropicimonas
  • species: Tropicimonas aquimaris
  • full scientific name: Tropicimonas aquimaris Oh et al. 2012

@ref: 30097

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhodobacterales

family: Rhodobacteraceae

genus: Tropicimonas

species: Tropicimonas aquimaris

strain designation: DPG-21

type strain: yes

Morphology

cell morphology

  • @ref: 30097
  • gram stain: negative
  • cell length: 1.2-15.0 µm
  • cell width: 0.8-1.2 µm
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 62340
  • incubation period: 3 days

pigmentation

  • @ref: 30097
  • production: yes

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
30097positivegrowth15-40
30097positiveoptimum30mesophilic
62340positivegrowth30mesophilic

culture pH

  • @ref: 30097
  • ability: positive
  • type: optimum
  • pH: 07-08

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
30097aerobe
62340aerobe

halophily

  • @ref: 30097
  • salt: NaCl
  • growth: positive
  • tested relation: optimum
  • concentration: 2 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3009726546rhamnose+carbon source
3009717632nitrate+reduction

enzymes

@refvalueactivityec
30097alkaline phosphatase+3.1.3.1
30097alpha-galactosidase+3.2.1.22

Isolation, sampling and environmental information

isolation

@refsample typesampling dategeographic locationcountryorigin.countrycontinent
30097seawater
62340Seawater2009Geoje,South SeaRepublic of KoreaKORAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Marine

Sequence information

16S sequences

  • @ref: 30097
  • description: Tropicimonas aquimaris strain DPG-21 16S ribosomal RNA gene, partial sequence
  • accession: HQ340608
  • length: 1390
  • database: nuccore
  • NCBI tax ID: 914152

GC content

  • @ref: 30097
  • GC-content: 69.6

External links

@ref: 30097

culture collection no.: KCTC 23424, CCUG 60524

straininfo link

@refpassport
20218http://www.straininfo.net/strains/869491
20218http://www.straininfo.net/strains/869490

Reference

@idauthorstitledoi/urljournalpubmedID_cross_referencecatalogue
20215D.Gleim, M.Kracht, N.Weiss et. al.Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes sincehttp://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.html
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.StrainInfo introduces electronic passports for microorganisms.10.1016/j.syapm.2013.11.002Syst Appl Microbiol. 37: 42-50 201424321274
2645310.1099/ijs.0.029371-0
30097Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-1726453
62340Curators of the CCUGhttps://www.ccug.se/strain?id=60524Culture Collection University of Gothenburg (CCUG) (CCUG 60524)