Strain identifier
BacDive ID: 133665
Type strain: 
Species: Mesorhizobium temperatum
Strain Designation: SDW018
NCBI tax ID(s): 241416 (species)
version 8.1 (current version)
General
@ref: 30021
BacDive-ID: 133665
keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped
description: Mesorhizobium temperatum SDW018 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from plant endophyte.
NCBI tax id
- NCBI tax id: 241416
- Matching level: species
doi: 10.13145/bacdive133665.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Phyllobacteriaceae
- genus: Mesorhizobium
- species: Mesorhizobium temperatum
- full scientific name: Mesorhizobium temperatum Gao et al. 2004
@ref: 30021
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Hyphomicrobiales
family: Phyllobacteriaceae
genus: Mesorhizobium
species: Mesorhizobium temperatum
strain designation: SDW018
type strain: yes
Morphology
cell morphology
- @ref: 30021
- gram stain: negative
- cell shape: rod-shaped
Physiology and metabolism
oxygen tolerance
- @ref: 30021
- oxygen tolerance: aerobe
spore formation
- @ref: 30021
- spore formation: no
Isolation, sampling and environmental information
isolation
- @ref: 30021
- sample type: plant endophyte
isolation source categories
| Cat1 | Cat2 |
|---|---|
| #Host | #Other |
| #Host | #Plants |
Sequence information
16S sequences
- @ref: 30021
- description: Mesorhizobium temperatum strain SDW 018 16S ribosomal RNA gene, complete sequence
- accession: AF508208
- length: 1403
- database: nuccore
- NCBI tax ID: 241416
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Mesorhizobium temperatum SDW018 | GCA_002284575 | contig | ncbi | 241416 |
| 66792 | Mesorhizobium temperatum SDW018 | 2878723704 | draft | img | 241416 |
GC content
- @ref: 30021
- GC-content: 65.1
External links
@ref: 30021
culture collection no.: CCBAU 11018 HAMBI 2583
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 15545425 | Mesorhizobium septentrionale sp. nov. and Mesorhizobium temperatum sp. nov., isolated from Astragalus adsurgens growing in the northern regions of China. | Gao JL, Turner SL, Kan FL, Wang ET, Tan ZY, Qiu YH, Gu J, Terefework Z, Young JPW, Lindstrom K, Chen WX | Int J Syst Evol Microbiol | 10.1099/ijs.0.02840-0 | 2004 | Acyltransferases/genetics, Alphaproteobacteria/*classification/*isolation & purification, Astragalus Plant/*microbiology, Bacterial Proteins/genetics, Bacterial Typing Techniques, China, DNA, Bacterial/chemistry/isolation & purification, DNA, Ribosomal/chemistry/isolation & purification, Genes, rRNA, Genotype, Glutamate-Ammonia Ligase/genetics, Molecular Sequence Data, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Rhizobium/genetics, Sequence Analysis, DNA | Genetics |
| Phylogeny | 18984708 | Mesorhizobium caraganae sp. nov., a novel rhizobial species nodulated with Caragana spp. in China. | Guan SH, Chen WF, Wang ET, Lu YL, Yan XR, Zhang XX, Chen WX | Int J Syst Evol Microbiol | 10.1099/ijs.0.65829-0 | 2008 | Alphaproteobacteria/chemistry/*classification/genetics/physiology, Bacterial Proteins/chemistry/genetics, Bacterial Typing Techniques, Caragana/*microbiology, China, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Fatty Acids/analysis, Genes, rRNA, Molecular Sequence Data, Nitrogen Fixation, Nucleic Acid Hybridization, Phenotype, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Species Specificity | Genetics |
| Phylogeny | 20008111 | Mesorhizobium robiniae sp. nov., isolated from root nodules of Robinia pseudoacacia. | Zhou PF, Chen WM, Wei GH | Int J Syst Evol Microbiol | 10.1099/ijs.0.019356-0 | 2009 | Alphaproteobacteria/*classification/genetics/*isolation & purification/metabolism, Bacterial Proteins/genetics/metabolism, DNA, Bacterial/genetics, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Robinia/*microbiology, Root Nodules, Plant/*microbiology | Metabolism |
Reference
| @id | authors | title | doi/url | ID_cross_reference | pubmed |
|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
| 30021 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 26385 | 28776041 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |