Strain identifier
BacDive ID: 133664
Type strain: 
Species: Mesorhizobium septentrionale
Strain Designation: SDW014
NCBI tax ID(s): 241413 (species)
version 8.1 (current version)
General
@ref: 30021
BacDive-ID: 133664
keywords: 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped
description: Mesorhizobium septentrionale SDW014 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from plant endophyte.
NCBI tax id
- NCBI tax id: 241413
- Matching level: species
doi: 10.13145/bacdive133664.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Phyllobacteriaceae
- genus: Mesorhizobium
- species: Mesorhizobium septentrionale
- full scientific name: Mesorhizobium septentrionale Gao et al. 2004
@ref: 30021
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Hyphomicrobiales
family: Phyllobacteriaceae
genus: Mesorhizobium
species: Mesorhizobium septentrionale
strain designation: SDW014
type strain: yes
Morphology
cell morphology
- @ref: 30021
- gram stain: negative
- cell shape: rod-shaped
Physiology and metabolism
oxygen tolerance
- @ref: 30021
- oxygen tolerance: aerobe
spore formation
- @ref: 30021
- spore formation: no
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 30021 | 28757 | fructose | + | carbon source |
| 30021 | 17234 | glucose | + | carbon source |
| 30021 | 25115 | malate | + | carbon source |
| 30021 | 17306 | maltose | + | carbon source |
| 30021 | 37684 | mannose | + | carbon source |
| 30021 | 28053 | melibiose | + | carbon source |
| 30021 | 30911 | sorbitol | + | carbon source |
| 30021 | 30031 | succinate | + | carbon source |
| 30021 | 17992 | sucrose | + | carbon source |
Isolation, sampling and environmental information
isolation
- @ref: 30021
- sample type: plant endophyte
isolation source categories
| Cat1 | Cat2 |
|---|---|
| #Host | #Other |
| #Host | #Plants |
taxonmaps
- @ref: 69479
- File name: preview.99_315.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_5;96_220;97_239;98_268;99_315&stattab=map
- Last taxonomy: Mesorhizobium
- 16S sequence: AF508207
- Sequence Identity:
- Total samples: 49047
- soil counts: 28701
- aquatic counts: 8865
- animal counts: 7451
- plant counts: 4030
Sequence information
16S sequences
- @ref: 30021
- description: Mesorhizobium septentrionale strain SDW 014 16S ribosomal RNA gene, complete sequence
- accession: AF508207
- length: 1415
- database: nuccore
- NCBI tax ID: 241413
GC content
- @ref: 30021
- GC-content: 59.4
External links
@ref: 30021
culture collection no.: CCBAU 11014, HAMBI 2582
straininfo link
- @ref: 91550
- straininfo: 132767
literature
- topic: Phylogeny
- Pubmed-ID: 15545425
- title: Mesorhizobium septentrionale sp. nov. and Mesorhizobium temperatum sp. nov., isolated from Astragalus adsurgens growing in the northern regions of China.
- authors: Gao JL, Turner SL, Kan FL, Wang ET, Tan ZY, Qiu YH, Gu J, Terefework Z, Young JPW, Lindstrom K, Chen WX
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.02840-0
- year: 2004
- mesh: Acyltransferases/genetics, Alphaproteobacteria/*classification/*isolation & purification, Astragalus Plant/*microbiology, Bacterial Proteins/genetics, Bacterial Typing Techniques, China, DNA, Bacterial/chemistry/isolation & purification, DNA, Ribosomal/chemistry/isolation & purification, Genes, rRNA, Genotype, Glutamate-Ammonia Ligase/genetics, Molecular Sequence Data, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Rhizobium/genetics, Sequence Analysis, DNA
- topic2: Genetics
Reference
| @id | authors | title | doi/url | ID_cross_reference | pubmed |
|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
| 30021 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 26385 | 28776041 |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | ||
| 91550 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID132767.1 |