Strain identifier
BacDive ID: 133648
Type strain: 
Species: Rhodopseudomonas parapalustris
Strain Designation: JA310
Strain history: <- Ch Sasikala, Centre for Environment, IST, JNTU
NCBI tax ID(s): 489619 (species)
version 8.1 (current version)
General
@ref: 29925
BacDive-ID: 133648
keywords: 16S sequence, Bacteria, anaerobe, motile, rod-shaped
description: Rhodopseudomonas parapalustris JA310 is an anaerobe, motile, rod-shaped bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 489619
- Matching level: species
strain history
- @ref: 67771
- history: <- Ch Sasikala, Centre for Environment, IST, JNTU
doi: 10.13145/bacdive133648.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Nitrobacteraceae
- genus: Rhodopseudomonas
- species: Rhodopseudomonas parapalustris
- full scientific name: Rhodopseudomonas parapalustris Venkata Ramana et al. 2012
@ref: 29925
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Hyphomicrobiales
family: Bradyrhizobiaceae
genus: Rhodopseudomonas
species: Rhodopseudomonas parapalustris
strain designation: JA310
type strain: yes
Morphology
cell morphology
| @ref | cell length | cell width | cell shape | motility | flagellum arrangement | gram stain |
|---|---|---|---|---|---|---|
| 29925 | 3 µm | 1 µm | rod-shaped | yes | ||
| 67771 | rod-shaped | yes | polar | |||
| 67771 | negative |
pigmentation
- @ref: 29925
- production: yes
Culture and growth conditions
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 29925 | positive | growth | 15-35 | |
| 29925 | positive | optimum | 30 | mesophilic |
| 67771 | positive | growth | 30 | mesophilic |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 29925 | positive | growth | 06-09 | alkaliphile |
| 29925 | positive | optimum | 6.75 |
Physiology and metabolism
oxygen tolerance
- @ref: 67771
- oxygen tolerance: anaerobe
halophily
- @ref: 29925
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: <0.5 %
observation
- @ref: 67771
- observation: quinones: Q-10
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 29925 | 17234 | glucose | + | carbon source |
| 29925 | 17754 | glycerol | + | carbon source |
| 29925 | 25115 | malate | + | carbon source |
| 29925 | 15361 | pyruvate | + | carbon source |
| 29925 | 30911 | sorbitol | + | carbon source |
| 29925 | 30031 | succinate | + | carbon source |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent | latitude | longitude |
|---|---|---|---|---|---|---|---|
| 29925 | soil | ||||||
| 67771 | From soil below salt crystals | near Pangong Lake, Jammu and Kashmir | India | IND | Asia | 33.7179 | 78.8968 |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_1553.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_86;96_297;97_329;98_1226;99_1553&stattab=map
- Last taxonomy: Rhodopseudomonas
- 16S sequence: AM947938
- Sequence Identity:
- Total samples: 4937
- soil counts: 1144
- aquatic counts: 1815
- animal counts: 1295
- plant counts: 683
Sequence information
16S sequences
- @ref: 29925
- description: Rhodopseudomonas parapalustris partial 16S rRNA gene, type strain JA310T
- accession: AM947938
- length: 1398
- database: nuccore
- NCBI tax ID: 489619
GC content
| @ref | GC-content | method |
|---|---|---|
| 29925 | 63.8 | |
| 67771 | 65.8 | high performance liquid chromatography (HPLC) |
External links
@ref: 29925
culture collection no.: NBRC 106083, KCTC 5839
literature
- topic: Phylogeny
- Pubmed-ID: 21986724
- title: Descriptions of Rhodopseudomonas parapalustris sp. nov., Rhodopseudomonas harwoodiae sp. nov. and Rhodopseudomonas pseudopalustris sp. nov., and emended description of Rhodopseudomonas palustris.
- authors: Ramana VV, Chakravarthy SK, Raj PS, Kumar BV, Shobha E, Ramaprasad EVV, Sasikala C, Ramana CV
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.026815-0
- year: 2011
- mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fresh Water/microbiology, Geologic Sediments/microbiology, India, Lipids/analysis, Molecular Sequence Data, Phenotype, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rhodopseudomonas/*classification/genetics/isolation & purification, Sequence Analysis, DNA, *Soil Microbiology, Species Specificity
- topic2: Genetics
Reference
| @id | authors | title | doi/url | ID_cross_reference | pubmed |
|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
| 29925 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 26296 | 28776041 |
| 67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |