Strain identifier
BacDive ID: 133637
Type strain: 
Species: Parasutterella secunda
Strain history: Y. Watanabe B168 (=YIT 12071).
NCBI tax ID(s): 626947 (species)
version 8.1 (current version)
General
@ref: 29874
BacDive-ID: 133637
DSM-Number: 22575
keywords: 16S sequence, Bacteria, anaerobe, mesophilic, Gram-negative, coccus-shaped
description: Parasutterella secunda DSM 22575 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from human - fecal.
NCBI tax id
- NCBI tax id: 626947
- Matching level: species
strain history
- @ref: 67770
- history: Y. Watanabe B168 (=YIT 12071).
doi: 10.13145/bacdive133637.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Burkholderiales
- family: Sutterellaceae
- genus: Parasutterella
- species: Parasutterella secunda
- full scientific name: Parasutterella secunda Morotomi et al. 2011
@ref: 29874
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Burkholderiales
family: Sutterellaceae
genus: Parasutterella
species: Parasutterella secunda
type strain: yes
Morphology
cell morphology
- @ref: 29874
- gram stain: negative
- cell length: 1.15 µm
- cell width: 0.85 µm
- cell shape: coccus-shaped
- motility: no
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 29874
- oxygen tolerance: anaerobe
spore formation
- @ref: 29874
- spore formation: no
observation
- @ref: 67770
- observation: quinones: MMK-5
enzymes
- @ref: 29874
- value: alkaline phosphatase
- activity: +
- ec: 3.1.3.1
Isolation, sampling and environmental information
isolation
| @ref | sample type |
|---|---|
| 29874 | human - fecal |
| 67770 | Human feces |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Human | |
| #Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
taxonmaps
- @ref: 69479
- File name: preview.99_23324.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_173;96_11767;97_14244;98_17579;99_23324&stattab=map
- Last taxonomy: Parasutterella secunda subclade
- 16S sequence: AB621360
- Sequence Identity:
- Total samples: 41523
- soil counts: 1000
- aquatic counts: 1784
- animal counts: 38489
- plant counts: 250
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 29874 | Parasutterella secunda gene for 16S rRNA, partial sequence | AB491209 | 1485 | nuccore | 626947 |
| 67770 | Parasutterella secunda gene for 16S ribosomal RNA, partial sequence, strain: JCM 16078 | AB621360 | 1494 | ena | 626947 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 29874 | 48.2 | |
| 67770 | 48.2 | high performance liquid chromatography (HPLC) |
External links
@ref: 29874
culture collection no.: DSM 22575, JCM 16078, YIT 12071, KCTC 15703
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 20400667 | Parasutterella secunda sp. nov., isolated from human faeces and proposal of Sutterellaceae fam. nov. in the order Burkholderiales. | Morotomi M, Nagai F, Watanabe Y | Int J Syst Evol Microbiol | 10.1099/ijs.0.023556-0 | 2010 | Bacterial Typing Techniques, Betaproteobacteria/*classification/genetics/*isolation & purification/physiology, Cluster Analysis, Culture Media/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Feces/*microbiology, Humans, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Pathogenicity |
| Phylogeny | 30394865 | Mesosutterella multiformis gen. nov., sp. nov., a member of the family Sutterellaceae and Sutterella megalosphaeroides sp. nov., isolated from human faeces. | Sakamoto M, Ikeyama N, Kunihiro T, Iino T, Yuki M, Ohkuma M | Int J Syst Evol Microbiol | 10.1099/ijsem.0.003096 | 2018 | Alcaligenaceae/classification, Bacterial Typing Techniques, Base Composition, Burkholderiales/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Feces/*microbiology, Female, Humans, Japan, Male, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry | Pathogenicity |
Reference
| @id | authors | title | doi/url | ID_cross_reference | pubmed |
|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
| 29874 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 26248 | 28776041 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |