Strain identifier
BacDive ID: 133632
Type strain: 
Species: Flavobacterium myungsuense
NCBI tax ID(s): 651823 (species)
version 8.1 (current version)
General
@ref: 29856
BacDive-ID: 133632
keywords: 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped
description: Flavobacterium myungsuense KCTC 22825 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from freshwater .
NCBI tax id
- NCBI tax id: 651823
- Matching level: species
doi: 10.13145/bacdive133632.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Flavobacteriia
- order: Flavobacteriales
- family: Flavobacteriaceae
- genus: Flavobacterium
- species: Flavobacterium myungsuense
- full scientific name: Flavobacterium myungsuense Joung et al. 2012
@ref: 29856
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Flavobacteriaceae
genus: Flavobacterium
species: Flavobacterium myungsuense
type strain: yes
Morphology
cell morphology
- @ref: 29856
- gram stain: negative
- cell length: 1.4-1.5 µm
- cell width: 0.7-0.8 µm
- cell shape: rod-shaped
- motility: no
pigmentation
- @ref: 29856
- production: yes
Culture and growth conditions
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 29856 | positive | growth | 4-25 | |
| 29856 | positive | optimum | 20 | psychrophilic |
culture pH
| @ref | ability | type | pH |
|---|---|---|---|
| 29856 | positive | growth | 07-08 |
| 29856 | positive | optimum | 7 |
Physiology and metabolism
oxygen tolerance
- @ref: 29856
- oxygen tolerance: aerobe
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 29856 | NaCl | positive | growth | 0-2 % |
| 29856 | NaCl | positive | optimum | 0.50 % |
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 29856 | 30089 | acetate | + | carbon source |
| 29856 | 17596 | inosine | + | carbon source |
| 29856 | 17306 | maltose | + | carbon source |
| 29856 | 18257 | ornithine | + | carbon source |
| 29856 | 26271 | proline | + | carbon source |
| 29856 | 30031 | succinate | + | carbon source |
| 29856 | 17748 | thymidine | + | carbon source |
| 29856 | 53426 | tween 80 | + | carbon source |
| 29856 | 4853 | esculin | + | hydrolysis |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 29856 | acid phosphatase | + | 3.1.3.2 |
| 29856 | alkaline phosphatase | + | 3.1.3.1 |
| 29856 | catalase | + | 1.11.1.6 |
| 29856 | cytochrome oxidase | + | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
- @ref: 29856
- sample type: freshwater (river, lake, pond)
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Freshwater |
| #Environmental | #Aquatic | #Lake (large) |
| #Environmental | #Aquatic | #Pond (small) |
| #Environmental | #Aquatic | #River (Creek) |
Sequence information
16S sequences
- @ref: 29856
- description: Flavobacterium myungsuense strain HMD1033 16S ribosomal RNA gene, partial sequence
- accession: GQ148878
- length: 1384
- database: nuccore
- NCBI tax ID: 651823
GC content
- @ref: 29856
- GC-content: 32.2
External links
@ref: 29856
culture collection no.: KCTC 22825, CECT 7649, HMD 1033
straininfo link
- @ref: 91534
- straininfo: 379625
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 21571932 | Flavobacterium yonginense sp. nov. and Flavobacterium myungsuense sp. nov., isolated from a mesotrophic artificial lake. | Joung Y, Kim H, Ahn TS, Joh K | Int J Syst Evol Microbiol | 10.1099/ijs.0.022814-0 | 2011 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacterium/*classification/genetics/isolation & purification, Lakes/*microbiology, Molecular Sequence Data, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Water Microbiology | Genetics |
| Phylogeny | 28920853 | Flavobacterium chuncheonense sp. nov. and Flavobacterium luteum sp. nov., isolated from a freshwater lake. | Park M, Nam GG, Kim S, Jeon HT, Joung Y, Cho JC | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002304 | 2017 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacterium/*classification/genetics/isolation & purification, Lakes/*microbiology, Nucleic Acid Hybridization, Phosphatidylethanolamines/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
Reference
| @id | authors | title | doi/url | ID_cross_reference | pubmed |
|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
| 29856 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 26230 | 28776041 |
| 91534 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID379625.1 |