Strain identifier
BacDive ID: 133597
Type strain: 
Species: Aquimarina macrocephali
Strain history: M. Miyazaki JAMB N27.
NCBI tax ID(s): 1443665 (strain), 666563 (species)
version 8.1 (current version)
General
@ref: 29687
BacDive-ID: 133597
keywords: 16S sequence, Bacteria, aerobe, Gram-negative, motile, rod-shaped
description: Aquimarina macrocephali JCM 15542 is an aerobe, Gram-negative, motile bacterium that was isolated from sediment adjacent to sperm whale carcasses.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 666563 | species |
| 1443665 | strain |
strain history
- @ref: 67770
- history: M. Miyazaki JAMB N27.
doi: 10.13145/bacdive133597.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Flavobacteriia
- order: Flavobacteriales
- family: Flavobacteriaceae
- genus: Aquimarina
- species: Aquimarina macrocephali
- full scientific name: Aquimarina macrocephali Miyazaki et al. 2010
@ref: 29687
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Flavobacteriaceae
genus: Aquimarina
species: Aquimarina macrocephali
type strain: yes
Morphology
cell morphology
- @ref: 29687
- gram stain: negative
- cell length: 3-25.5 µm
- cell width: 0.4-0.6 µm
- cell shape: rod-shaped
- motility: yes
- flagellum arrangement: gliding
pigmentation
- @ref: 29687
- production: yes
Culture and growth conditions
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 29687 | positive | growth | 08-30 | |
| 29687 | positive | optimum | 24 | psychrophilic |
| 67770 | positive | growth | 20 | psychrophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 29687
- oxygen tolerance: aerobe
spore formation
- @ref: 29687
- spore formation: no
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 29687 | NaCl | positive | growth | 01-04 % |
| 29687 | NaCl | positive | optimum | 02-03 % |
observation
| @ref | observation |
|---|---|
| 29687 | aggregates in chains |
| 67770 | quinones: MK-6 |
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 29687 | 17306 | maltose | + | carbon source |
| 29687 | 37684 | mannose | + | carbon source |
| 29687 | 27082 | trehalose | + | carbon source |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 29687 | catalase | + | 1.11.1.6 |
| 29687 | cytochrome oxidase | + | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | country | origin.country | continent |
|---|---|---|---|---|
| 29687 | sediment adjacent to sperm whale carcasses | |||
| 67770 | Sediment adjacent to a sperm whale carcass off Kagoshima | Japan | JPN | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Sediment |
| #Host | #Other | #Decomposing animal |
| #Host | #Mammals | #Aquatic mammal |
taxonmaps
- @ref: 69479
- File name: preview.99_7712.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_52;96_492;97_2356;98_5639;99_7712&stattab=map
- Last taxonomy: Aquimarina macrocephali subclade
- 16S sequence: AB517144
- Sequence Identity:
- Total samples: 129
- soil counts: 4
- aquatic counts: 92
- animal counts: 33
Sequence information
16S sequences
- @ref: 29687
- description: Aquimarina macrocephali gene for 16S ribosomal RNA, partial sequence
- accession: AB517144
- length: 1467
- database: nuccore
- NCBI tax ID: 1443665
GC content
| @ref | GC-content | method |
|---|---|---|
| 29687 | 33.1 | |
| 67770 | 33.1 | high performance liquid chromatography (HPLC) |
External links
@ref: 29687
culture collection no.: JCM 15542, NCIMB 14508, JAMB N27
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 19915102 | Aquimarina macrocephali sp. nov., isolated from sediment adjacent to sperm whale carcasses. | Miyazaki M, Nagano Y, Fujiwara Y, Hatada Y, Nogi Y | Int J Syst Evol Microbiol | 10.1099/ijs.0.018747-0 | 2009 | Aerobiosis, Animals, Bacterial Typing Techniques, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Flavobacteriaceae/*classification/genetics/*isolation & purification/physiology, Geologic Sediments/*microbiology, Japan, Locomotion, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sperm Whale | Genetics |
| Phylogeny | 22003036 | Aquimarina mytili sp. nov., isolated from the gut microflora of a mussel, Mytilus coruscus, and emended description of Aquimarina macrocephali. | Park SC, Choe HN, Baik KS, Seong CN | Int J Syst Evol Microbiol | 10.1099/ijs.0.032904-0 | 2011 | Animals, Bacterial Typing Techniques, Base Composition, Bivalvia/*microbiology, DNA, Bacterial/genetics, Fatty Acids/analysis, Flavobacteriaceae/*classification/genetics/isolation & purification, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/analysis | Genetics |
| Phylogeny | 22771683 | Aquimarina longa sp. nov., isolated from seawater, and emended description of Aquimarina muelleri. | Yu T, Yin Q, Song X, Zhao R, Shi X, Zhang XH | Int J Syst Evol Microbiol | 10.1099/ijs.0.041509-0 | 2012 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Flavobacteriaceae/*classification/genetics/isolation & purification, Molecular Sequence Data, Pacific Ocean, Phosphatidylethanolamines/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/analysis, Water Microbiology | Genetics |
| Phylogeny | 24030690 | Aquimarina megaterium sp. nov., isolated from seawater. | Yu T, Zhang Z, Fan X, Shi X, Zhang XH | Int J Syst Evol Microbiol | 10.1099/ijs.0.055517-0 | 2013 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/genetics/isolation & purification, Molecular Sequence Data, Pacific Ocean, Phosphatidylethanolamines/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
| Phylogeny | 24626966 | Aquimarina pacifica sp. nov., isolated from seawater. | Zhang Z, Yu T, Xu T, Zhang XH | Int J Syst Evol Microbiol | 10.1099/ijs.0.062695-0 | 2014 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/genetics/isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, Pacific Ocean, Phosphatidylethanolamines/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
| Phylogeny | 24906660 | Aquimarina atlantica sp. nov., isolated from surface seawater of the Atlantic Ocean. | Li G, Lai Q, Sun F, Liu X, Xie Y, Du Y, Li G, Shao Z | Antonie Van Leeuwenhoek | 10.1007/s10482-014-0196-2 | 2014 | Atlantic Ocean, Bacterial Typing Techniques, Base Composition, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Flavobacteriaceae/*classification/genetics/*isolation & purification/physiology, Molecular Sequence Data, Phospholipids/analysis, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Sodium Chloride/metabolism, Temperature | Genetics |
| Phylogeny | 27259860 | Aquimarina aggregata sp. nov., isolated from seawater. | Wang Y, Ming H, Guo W, Chen H, Zhou C | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001209 | 2016 | Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/genetics/isolation & purification, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
| Phylogeny | 29915892 | Aquimarina sediminis sp. nov., isolated from coastal sediment. | Wang NN, Zhou LY, Li YX, Du ZJ | Antonie Van Leeuwenhoek | 10.1007/s10482-018-1115-8 | 2018 | Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry/metabolism, Flavobacteriaceae/classification/genetics/*isolation & purification/metabolism, Geologic Sediments/*microbiology, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/microbiology | Metabolism |
Reference
| @id | authors | title | doi/url | ID_cross_reference | pubmed |
|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
| 29687 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 26072 | 28776041 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |