Strain identifier
BacDive ID: 133592
Type strain: 
Species: Halopelagius inordinatus
Strain Designation: RO5-2
Strain history: H.-L. Cui RO5-2.
NCBI tax ID(s): 553467 (species)
version 8.1 (current version)
General
@ref: 29678
BacDive-ID: 133592
keywords: genome sequence, 16S sequence, Archaea, aerobe, Gram-negative, motile, ovoid-shaped
description: Halopelagius inordinatus RO5-2 is an aerobe, Gram-negative, motile archaeon that was isolated from marine solar saltern.
NCBI tax id
- NCBI tax id: 553467
- Matching level: species
strain history
- @ref: 67770
- history: H.-L. Cui RO5-2.
doi: 10.13145/bacdive133592.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/methanobacteriota
- domain: Archaea
- phylum: Methanobacteriota
- class: Halobacteria
- order: Haloferacales
- family: Haloferacaceae
- genus: Halopelagius
- species: Halopelagius inordinatus
- full scientific name: Halopelagius inordinatus Cui et al. 2010
@ref: 29678
domain: Archaea
phylum: Euryarchaeota
class: Halobacteria
order: Haloferacales
family: Haloferacaceae
genus: Halopelagius
species: Halopelagius inordinatus
strain designation: RO5-2
type strain: yes
Morphology
cell morphology
- @ref: 29678
- gram stain: negative
- cell shape: ovoid-shaped
- motility: yes
pigmentation
- @ref: 29678
- production: yes
Culture and growth conditions
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 29678 | positive | growth | 20-50 | |
| 29678 | positive | optimum | 37 | mesophilic |
| 67770 | positive | growth | 37 | mesophilic |
culture pH
| @ref | ability | type | pH |
|---|---|---|---|
| 29678 | positive | growth | 5.5-8 |
| 29678 | positive | optimum | 6.5-7 |
Physiology and metabolism
oxygen tolerance
- @ref: 29678
- oxygen tolerance: aerobe
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 29678 | NaCl | positive | growth | 15-28 % |
| 29678 | NaCl | positive | optimum | 20-22 % |
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 29678 | 30089 | acetate | + | carbon source |
| 29678 | 16449 | alanine | + | carbon source |
| 29678 | 28757 | fructose | + | carbon source |
| 29678 | 28260 | galactose | + | carbon source |
| 29678 | 17234 | glucose | + | carbon source |
| 29678 | 29987 | glutamate | + | carbon source |
| 29678 | 17754 | glycerol | + | carbon source |
| 29678 | 24996 | lactate | + | carbon source |
| 29678 | 17716 | lactose | + | carbon source |
| 29678 | 25115 | malate | + | carbon source |
| 29678 | 17306 | maltose | + | carbon source |
| 29678 | 37684 | mannose | + | carbon source |
| 29678 | 18257 | ornithine | + | carbon source |
| 29678 | 30911 | sorbitol | + | carbon source |
| 29678 | 30031 | succinate | + | carbon source |
| 29678 | 17992 | sucrose | + | carbon source |
metabolite production
- @ref: 29678
- Chebi-ID: 35581
- metabolite: indole
- production: yes
metabolite tests
- @ref: 29678
- Chebi-ID: 35581
- metabolite: indole
- indole test: +
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 29678 | catalase | + | 1.11.1.6 |
| 29678 | cytochrome oxidase | + | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 29678 | marine solar saltern | ||||
| 67770 | Rudong solar saltern | Jiangsu | China | CHN | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Marine |
| #Condition | #Saline | |
| #Engineered | #Industrial | #Industrial production |
| #Environmental | #Terrestrial | #Coast |
taxonmaps
- @ref: 69479
- File name: preview.99_188814.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17828;96_69649;97_90456;98_122948;99_188814&stattab=map
- Last taxonomy: Halopelagius inordinatus
- 16S sequence: EU887284
- Sequence Identity:
- Total samples: 201
- soil counts: 116
- aquatic counts: 70
- animal counts: 15
Sequence information
16S sequences
- @ref: 29678
- description: Halobacteriaceae archaeon RO5-2 16S ribosomal RNA gene, complete sequence
- accession: EU887284
- length: 1472
- database: nuccore
- NCBI tax ID: 553467
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Halopelagius inordinatus CGMCC 1.7739 | 2617270917 | draft | img | 553467 |
| 67770 | Halopelagius inordinatus CGMCC 1.7739 | GCA_900113245 | contig | ncbi | 553467 |
| 66792 | Halopelagius inordinatus strain CGMCC 1.7739 | 553467.4 | wgs | patric | 553467 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 29678 | 61 | |
| 67770 | 61 | high performance liquid chromatography (HPLC) |
External links
@ref: 29678
culture collection no.: CGMCC 1.7739, JCM 15773
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 19854878 | Halopelagius inordinatus gen. nov., sp. nov., a new member of the family Halobacteriaceae isolated from a marine solar saltern. | Cui HL, Li XY, Gao X, Xu XW, Zhou YG, Liu HC, Oren A, Zhou PJ | Int J Syst Evol Microbiol | 10.1099/ijs.0.018598-0 | 2009 | DNA, Archaeal/genetics, DNA, Ribosomal/genetics, Fatty Acids/metabolism, Halobacteriaceae/*classification/genetics/*isolation & purification/metabolism, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sodium Chloride/*metabolism | Metabolism |
| Phylogeny | 23125321 | Halopelagius fulvigenes sp. nov., a halophilic archaeon isolated from a lake. | Liu BB, Tang SK, Cui HL, Zhang YG, Li L, Zhang YM, Zhang LL, Li WJ | Int J Syst Evol Microbiol | 10.1099/ijs.0.045773-0 | 2012 | Base Composition, China, DNA, Archaeal/genetics, Halobacteriaceae/*classification/genetics/isolation & purification, Lakes/*microbiology, Lipids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Water Microbiology | Genetics |
| Phylogeny | 23584287 | Halopelagius longus sp. nov., a member of the family Halobacteriaceae isolated from a salt mine, and emended description of the genus Halopelagius. | Zhang X, Zhang WY, Shen AH, Huo YY, Zhu XF, Wu M | Int J Syst Evol Microbiol | 10.1099/ijs.0.051375-0 | 2013 | Base Composition, China, DNA, Archaeal/genetics, Halobacteriaceae/*classification/genetics/metabolism, Lipids/analysis, *Mining, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, *Sodium Chloride | Genetics |
Reference
| @id | authors | title | doi/url | ID_cross_reference | pubmed |
|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
| 29678 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 26063 | 28776041 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | ||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |