Strain identifier

BacDive ID: 133589

Type strain: Yes

Species: Adhaeribacter aerophilus

Strain Designation: 6424S-25

NCBI tax ID(s): 670288 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 8.1 (current version)

General

@ref: 29671

BacDive-ID: 133589

keywords: 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped

description: Adhaeribacter aerophilus 6424S-25 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from air sample.

NCBI tax id

  • NCBI tax id: 670288
  • Matching level: species

doi: 10.13145/bacdive133589.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Cytophagia
  • order: Cytophagales
  • family: Hymenobacteraceae
  • genus: Adhaeribacter
  • species: Adhaeribacter aerophilus
  • full scientific name: Adhaeribacter aerophilus Weon et al. 2010

@ref: 29671

domain: Bacteria

phylum: Bacteroidetes

class: Cytophagia

order: Cytophagales

family: Hymenobacteraceae

genus: Adhaeribacter

species: Adhaeribacter aerophilus

strain designation: 6424S-25

type strain: yes

Morphology

cell morphology

  • @ref: 29671
  • gram stain: negative
  • cell length: 2-4.3 µm
  • cell width: 0.9-1.1 µm
  • cell shape: rod-shaped
  • motility: no

pigmentation

  • @ref: 29671
  • production: yes

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
29671positivegrowth10-37
29671positiveoptimum30-37mesophilic

culture pH

@refabilitytypepHPH range
29671positivegrowth6.5-8.5alkaliphile
29671positiveoptimum7

Physiology and metabolism

oxygen tolerance

  • @ref: 29671
  • oxygen tolerance: aerobe

spore formation

  • @ref: 29671
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
29671NaClpositivegrowth0-1 %
29671NaClpositiveoptimum0-1 %

observation

  • @ref: 29671
  • observation: aggregates in chains

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2967122599arabinose+carbon source
2967117057cellobiose+carbon source
2967128260galactose+carbon source
2967117234glucose+carbon source
2967128087glycogen+carbon source
2967117716lactose+carbon source
2967115792malonate+carbon source
2967117306maltose+carbon source
2967137684mannose+carbon source
2967128053melibiose+carbon source
29671506227N-acetylglucosamine+carbon source
2967116634raffinose+carbon source
2967126546rhamnose+carbon source
2967117814salicin+carbon source
2967117992sucrose+carbon source
2967127082trehalose+carbon source
2967118222xylose+carbon source
296714853esculin+hydrolysis

enzymes

@refvalueactivityec
29671acid phosphatase+3.1.3.2
29671alkaline phosphatase+3.1.3.1
29671catalase+1.11.1.6
29671cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

  • @ref: 29671
  • sample type: air sample

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Air

taxonmaps

  • @ref: 69479
  • File name: preview.99_14164.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_60;96_7306;97_8764;98_10743;99_14164&stattab=map
  • Last taxonomy: Adhaeribacter aerophilus subclade
  • 16S sequence: GQ421850
  • Sequence Identity:
  • Total samples: 302
  • soil counts: 228
  • aquatic counts: 18
  • animal counts: 22
  • plant counts: 34

Sequence information

16S sequences

  • @ref: 29671
  • description: Adhaeribacter aerophilus strain 6424S-25 16S ribosomal RNA gene, partial sequence
  • accession: GQ421850
  • length: 1410
  • database: nuccore
  • NCBI tax ID: 670288

GC content

  • @ref: 29671
  • GC-content: 44.5

External links

@ref: 29671

culture collection no.: KACC 14118, NBRC 106134

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny19946049Adhaeribacter aerophilus sp. nov., Adhaeribacter aerolatus sp. nov. and Segetibacter aerophilus sp. nov., isolated from air samples.Weon HY, Kwon SW, Son JA, Kim SJ, Kim YS, Kim BY, Ka JOInt J Syst Evol Microbiol10.1099/ijs.0.018374-02009Aerobiosis, *Air Microbiology, Bacterial Typing Techniques, Bacteroidetes/chemistry/*classification/genetics/*isolation & purification, Base Composition, Cluster Analysis, Cytophagaceae/chemistry/*classification/genetics/*isolation & purification, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Korea, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNAEnzymology
Phylogeny29458531Adhaeribacter swui sp. nov., isolated from wet mud.Kim DU, Kim KW, Kang MS, Kim JY, Jang JH, Kim MKInt J Syst Evol Microbiol10.1099/ijsem.0.0026312018Bacterial Typing Techniques, Bacteroidetes/*classification/genetics/isolation & purification, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Glycolipids/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorstitledoi/urlID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
29671Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172605728776041
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/