Strain identifier
BacDive ID: 133587
Type strain: 
Species: Adhaeribacter aerolatus
Strain Designation: 6515J-31
NCBI tax ID(s): 670289 (species)
version 8.1 (current version)
General
@ref: 29671
BacDive-ID: 133587
keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped
description: Adhaeribacter aerolatus 6515J-31 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from air sample.
NCBI tax id
- NCBI tax id: 670289
- Matching level: species
doi: 10.13145/bacdive133587.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Cytophagia
- order: Cytophagales
- family: Hymenobacteraceae
- genus: Adhaeribacter
- species: Adhaeribacter aerolatus
- full scientific name: Adhaeribacter aerolatus Weon et al. 2010
@ref: 29671
domain: Bacteria
phylum: Bacteroidetes
class: Cytophagia
order: Cytophagales
family: Hymenobacteraceae
genus: Adhaeribacter
species: Adhaeribacter aerolatus
strain designation: 6515J-31
type strain: yes
Morphology
cell morphology
| @ref | gram stain | cell length | cell width | cell shape | motility | confidence |
|---|---|---|---|---|---|---|
| 29671 | negative | 1.8-2.8 µm | 1-1.2 µm | rod-shaped | no | |
| 69480 | negative | 99.997 |
pigmentation
- @ref: 29671
- production: yes
Culture and growth conditions
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 29671 | positive | growth | 10-35 | |
| 29671 | positive | optimum | 30 | mesophilic |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 29671 | positive | growth | 6.5-9 | alkaliphile |
| 29671 | positive | optimum | 7 |
Physiology and metabolism
oxygen tolerance
- @ref: 29671
- oxygen tolerance: aerobe
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 29671 | no | |
| 69481 | no | 100 |
| 69480 | no | 99.969 |
halophily
- @ref: 29671
- salt: NaCl
- growth: positive
- tested relation: optimum
- concentration: 0-1.5 %
observation
- @ref: 29671
- observation: aggregates in chains
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 29671 | 22599 | arabinose | + | carbon source |
| 29671 | 17057 | cellobiose | + | carbon source |
| 29671 | 28757 | fructose | + | carbon source |
| 29671 | 28260 | galactose | + | carbon source |
| 29671 | 17234 | glucose | + | carbon source |
| 29671 | 24996 | lactate | + | carbon source |
| 29671 | 17716 | lactose | + | carbon source |
| 29671 | 17306 | maltose | + | carbon source |
| 29671 | 37684 | mannose | + | carbon source |
| 29671 | 28053 | melibiose | + | carbon source |
| 29671 | 506227 | N-acetylglucosamine | + | carbon source |
| 29671 | 16634 | raffinose | + | carbon source |
| 29671 | 26546 | rhamnose | + | carbon source |
| 29671 | 33942 | ribose | + | carbon source |
| 29671 | 17814 | salicin | + | carbon source |
| 29671 | 17992 | sucrose | + | carbon source |
| 29671 | 27082 | trehalose | + | carbon source |
| 29671 | 18222 | xylose | + | carbon source |
| 29671 | 4853 | esculin | + | hydrolysis |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 29671 | acid phosphatase | + | 3.1.3.2 |
| 29671 | alkaline phosphatase | + | 3.1.3.1 |
| 29671 | catalase | + | 1.11.1.6 |
| 29671 | cytochrome oxidase | + | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
- @ref: 29671
- sample type: air sample
isolation source categories
- Cat1: #Environmental
- Cat2: #Air
taxonmaps
- @ref: 69479
- File name: preview.99_14162.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_60;96_7306;97_8762;98_10741;99_14162&stattab=map
- Last taxonomy: Adhaeribacter aerolatus subclade
- 16S sequence: GQ421846
- Sequence Identity:
- Total samples: 618
- soil counts: 457
- aquatic counts: 45
- animal counts: 82
- plant counts: 34
Sequence information
16S sequences
- @ref: 29671
- description: Adhaeribacter aerolatus strain 6515J-31 16S ribosomal RNA gene, partial sequence
- accession: GQ421846
- length: 1486
- database: nuccore
- NCBI tax ID: 670289
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Adhaeribacter aerolatus NBRC 106133 | GCA_007991635 | contig | ncbi | 670289 |
| 66792 | Adhaeribacter aerolatus strain NBRC 106133 | 670289.3 | wgs | patric | 670289 |
GC content
- @ref: 29671
- GC-content: 43.9
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| gram-positive | no | 96.928 | yes |
| anaerobic | no | 99.522 | yes |
| halophile | no | 91.962 | no |
| spore-forming | no | 94.69 | no |
| glucose-util | yes | 85.503 | no |
| thermophile | no | 95.66 | yes |
| flagellated | no | 96.033 | no |
| motile | no | 92.955 | no |
| aerobic | yes | 92.619 | yes |
| glucose-ferment | no | 86.087 | no |
External links
@ref: 29671
culture collection no.: KACC 14117, NBRC 106133
literature
- topic: Phylogeny
- Pubmed-ID: 19946049
- title: Adhaeribacter aerophilus sp. nov., Adhaeribacter aerolatus sp. nov. and Segetibacter aerophilus sp. nov., isolated from air samples.
- authors: Weon HY, Kwon SW, Son JA, Kim SJ, Kim YS, Kim BY, Ka JO
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.018374-0
- year: 2009
- mesh: Aerobiosis, *Air Microbiology, Bacterial Typing Techniques, Bacteroidetes/chemistry/*classification/genetics/*isolation & purification, Base Composition, Cluster Analysis, Cytophagaceae/chemistry/*classification/genetics/*isolation & purification, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Korea, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
- topic2: Enzymology
Reference
| @id | authors | title | doi/url | ID_cross_reference | pubmed | journal |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 29671 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 26057 | 28776041 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | 33211880 | Nucleic Acids Res. 49: D498-D508 2020 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |