Strain identifier

BacDive ID: 133574

Type strain: Yes

Species: Psychrobacter aestuarii

Strain history: CIP <- 2016, JCM <- 2009, C.N Seong, Sunchon Univ., Suncheon, Korea: strain SC35

NCBI tax ID(s): 556327 (species)

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General

@ref: 29600

BacDive-ID: 133574

keywords: 16S sequence, Bacteria, aerobe, Gram-negative, ovoid-shaped

description: Psychrobacter aestuarii KCTC 22503 is an aerobe, Gram-negative, ovoid-shaped bacterium that was isolated from Tidal flat sediment.

NCBI tax id

  • NCBI tax id: 556327
  • Matching level: species

strain history

@refhistory
67770C. N. Seong SC35.
116097CIP <- 2016, JCM <- 2009, C.N Seong, Sunchon Univ., Suncheon, Korea: strain SC35

doi: 10.13145/bacdive133574.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Moraxellaceae
  • genus: Psychrobacter
  • species: Psychrobacter aestuarii
  • full scientific name: Psychrobacter aestuarii Baik et al. 2010

@ref: 29600

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Moraxellaceae

genus: Psychrobacter

species: Psychrobacter aestuarii

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
29600negative1.15 µm0.65 µmovoid-shapedno
116097negativeoval-shapedno

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
41743Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)
116097CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13

culture temp

@refgrowthtypetemperaturerange
29600positivegrowth04-37
29600positiveoptimum25mesophilic
41743positivegrowth30mesophilic
67770positivegrowth30mesophilic

culture pH

@refabilitytypepHPH range
29600positivegrowth07-09alkaliphile
29600positiveoptimum7.5

Physiology and metabolism

oxygen tolerance

  • @ref: 29600
  • oxygen tolerance: aerobe

spore formation

  • @ref: 29600
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
29600NaClpositivegrowth0-4 %
29600NaClpositiveoptimum1.5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2960030089acetate+carbon source
2960021217L-alaninamide+carbon source
2960016449alanine+carbon source
2960040585alpha-cyclodextrin+carbon source
2960022653asparagine+carbon source
2960016947citrate+carbon source
2960029987glutamate+carbon source
2960028087glycogen+carbon source
2960024996lactate+carbon source
2960025017leucine+carbon source
2960018257ornithine+carbon source
2960050048phenylethylamine+carbon source
2960028044phenylalanine+carbon source
2960026271proline+carbon source
2960051850methyl pyruvate+carbon source
2960026490quinate+carbon source
2960030031succinate+carbon source
2960053423tween 40+carbon source
2960053426tween 80+carbon source
296004853esculin+hydrolysis

enzymes

@refvalueactivityec
29600catalase+1.11.1.6
29600cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
67770Tidal flat sediment
116097Environment, Tidal flat sedimentSuncheon BayRepublic of KoreaKORAsia

taxonmaps

  • @ref: 69479
  • File name: preview.99_78367.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_80;96_193;97_2757;98_31910;99_78367&stattab=map
  • Last taxonomy: Psychrobacter aestuarii subclade
  • 16S sequence: EU939718
  • Sequence Identity:
  • Total samples: 168
  • soil counts: 9
  • aquatic counts: 125
  • animal counts: 31
  • plant counts: 3

Safety information

risk assessment

  • @ref: 116097
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

16S sequences

  • @ref: 29600
  • description: Psychrobacter aestuarii strain SC35 16S ribosomal RNA gene, partial sequence
  • accession: EU939718
  • length: 1424
  • database: nuccore
  • NCBI tax ID: 556327

GC content

@refGC-contentmethod
2960048.5
6777048.5thermal denaturation, midpoint method (Tm)

External links

@ref: 29600

culture collection no.: KCTC 22503, JCM 16343, SC 35, CIP 110994

straininfo link

  • @ref: 91512
  • straininfo: 414061

literature

  • topic: Phylogeny
  • Pubmed-ID: 19717579
  • title: Psychrobacter aestuarii sp. nov., isolated from a tidal flat sediment.
  • authors: Baik KS, Park SC, Lim CH, Lee KH, Jeon DY, Kim CM, Seong CN
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.016782-0
  • year: 2009
  • mesh: Base Sequence, Fatty Acids/analysis, Geologic Sediments/*microbiology, Molecular Sequence Data, Phylogeny, Psychrobacter/*classification/genetics/isolation & purification/physiology, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology
  • topic2: Genetics

Reference

@idauthorstitledoi/urlID_cross_referencepubmedcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
29600Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172599128776041
41743Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/34601
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
91512Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID414061.1
116097Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110994Collection of Institut Pasteur (CIP 110994)