Strain identifier
BacDive ID: 133553
Type strain: 
Species: Mesorhizobium alhagi
Strain Designation: CCNWXJ12-2
NCBI tax ID(s): 475067 (species)
version 8.1 (current version)
General
@ref: 29485
BacDive-ID: 133553
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile, rod-shaped
description: Mesorhizobium alhagi CCNWXJ12-2 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from plant associated.
NCBI tax id
- NCBI tax id: 475067
- Matching level: species
doi: 10.13145/bacdive133553.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Phyllobacteriaceae
- genus: Mesorhizobium
- species: Mesorhizobium alhagi
- full scientific name: Mesorhizobium alhagi Chen et al. 2010
@ref: 29485
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Hyphomicrobiales
family: Phyllobacteriaceae
genus: Mesorhizobium
species: Mesorhizobium alhagi
strain designation: CCNWXJ12-2
type strain: yes
Morphology
cell morphology
- @ref: 29485
- gram stain: negative
- cell length: 1.4 µm
- cell width: 0.6 µm
- cell shape: rod-shaped
- motility: yes
Culture and growth conditions
culture temp
- @ref: 29485
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
culture pH
- @ref: 29485
- ability: positive
- type: growth
- pH: 6.8-10
- PH range: alkaliphile
Physiology and metabolism
oxygen tolerance
- @ref: 29485
- oxygen tolerance: aerobe
spore formation
- @ref: 29485
- spore formation: no
halophily
- @ref: 29485
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: 1 %
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 29485 | 22599 | arabinose | + | carbon source |
| 29485 | 28757 | fructose | + | carbon source |
| 29485 | 17306 | maltose | + | carbon source |
| 29485 | 28053 | melibiose | + | carbon source |
| 29485 | 26546 | rhamnose | + | carbon source |
| 29485 | 30911 | sorbitol | + | carbon source |
| 29485 | 18222 | xylose | + | carbon source |
Isolation, sampling and environmental information
isolation
- @ref: 29485
- sample type: plant associated
isolation source categories
- Cat1: #Host
- Cat2: #Plants
taxonmaps
- @ref: 69479
- File name: preview.99_8199.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_5;96_220;97_4645;98_5965;99_8199&stattab=map
- Last taxonomy: Mesorhizobium
- 16S sequence: EU169578
- Sequence Identity:
- Total samples: 5513
- soil counts: 2575
- aquatic counts: 710
- animal counts: 814
- plant counts: 1414
Sequence information
16S sequences
- @ref: 29485
- description: Mesorhizobium alhagi CCNWXJ12-2 16S ribosomal RNA gene, partial sequence
- accession: EU169578
- length: 1342
- database: nuccore
- NCBI tax ID: 1107882
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Mesorhizobium alhagi CCNWXJ12-2 | GCA_000236565 | contig | ncbi | 1107882 |
| 66792 | Mesorhizobium alhagi CCNWXJ12-2 | 1107882.3 | wgs | patric | 1107882 |
| 66792 | Mesorhizobium alhagi CCNWXJ12-2 | 2513237351 | draft | img | 1107882 |
GC content
- @ref: 29485
- GC-content: 59.5-63.3
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 86.875 | yes |
| flagellated | no | 78.65 | no |
| gram-positive | no | 97.533 | yes |
| anaerobic | no | 96.652 | no |
| aerobic | yes | 89.805 | yes |
| halophile | no | 82.364 | no |
| spore-forming | no | 94.316 | yes |
| thermophile | no | 99.164 | yes |
| glucose-util | yes | 89.714 | no |
| glucose-ferment | no | 91.938 | no |
External links
@ref: 29485
culture collection no.: ACCC 15461, HAMBI 3019
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 19661514 | Mesorhizobium alhagi sp. nov., isolated from wild Alhagi sparsifolia in north-western China. | Chen WM, Zhu WF, Bontemps C, Young JPW, Wei GH | Int J Syst Evol Microbiol | 10.1099/ijs.0.014043-0 | 2009 | Alphaproteobacteria/*classification/genetics/*isolation & purification/physiology, Bacterial Proteins/genetics, Bacterial Typing Techniques, Base Composition, China, DNA, Ribosomal/analysis/genetics, Fabaceae/*microbiology, Fatty Acids/analysis, Genes, rRNA, Molecular Sequence Data, Nucleic Acid Hybridization, Plant Roots/microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Species Specificity, Symbiosis | Genetics |
| Genetics | 22328758 | Draft genome sequence of Mesorhizobium alhagi CCNWXJ12-2T, a novel salt-resistant species isolated from the desert of northwestern China. | Zhou M, Chen W, Chen H, Wei G | J Bacteriol | 10.1128/JB.06635-11 | 2012 | Alkalies/toxicity, China, DNA, Bacterial/*chemistry/*genetics, Desert Climate, Drug Tolerance, Fabaceae/microbiology, Gene Expression Regulation, Bacterial, *Genome, Bacterial, Mesorhizobium/drug effects/*genetics/*isolation & purification, Metabolic Networks and Pathways/genetics, Molecular Sequence Data, Plant Roots/microbiology, Rhizosphere, Salts/toxicity, Sequence Analysis, DNA, *Soil Microbiology | Transcriptome |
| Transcriptome | 25539655 | Global transcriptome analysis of Mesorhizobium alhagi CCNWXJ12-2 under salt stress. | Liu X, Luo Y, Mohamed OA, Liu D, Wei G | BMC Microbiol | 10.1186/s12866-014-0319-y | 2014 | China, Fabaceae/microbiology, *Gene Expression Profiling, High-Throughput Nucleotide Sequencing, Mesorhizobium/*drug effects/*genetics/isolation & purification, *Osmotic Pressure, Salts/*metabolism | Stress |
| Stress | 27686068 | Functional analysis of PrkA - a putative serine protein kinase from Mesorhizobium alhagi CCNWXJ12-2 - in stress resistance. | Liu X, Luo Y, Li Z, Wei G | BMC Microbiol | 10.1186/s12866-016-0849-6 | 2016 | ||
| Pathogenicity | 28097405 | Role of exopolysaccharide in salt stress resistance and cell motility of Mesorhizobium alhagi CCNWXJ12-2(T). | Liu X, Luo Y, Li Z, Wang J, Wei G | Appl Microbiol Biotechnol | 10.1007/s00253-017-8114-y | 2017 | Antioxidants/metabolism, Base Sequence, DNA Transposable Elements, Fabaceae/microbiology, Mesorhizobium/*drug effects/genetics/*physiology, Movement/drug effects, Multigene Family, Mutagenesis, Plant Roots/microbiology, Polysaccharides, Bacterial/biosynthesis/deficiency/*genetics/*metabolism, Sodium Chloride/*pharmacology, Stress, Physiological/*drug effects/genetics, Symbiosis | Metabolism |
| Stress | 29515545 | Functional Analysis of a Putative Type III Secretion System in Stress Adaption by Mesorhizobium alhagi CCNWXJ12-2(T). | Liu X, Luo Y, Li Z, Wei G | Front Microbiol | 10.3389/fmicb.2018.00263 | 2018 | ||
| Phylogeny | 32468221 | Mesorhizobium rhizophilum sp. nov., a 1-aminocyclopropane-1-carboxylate deaminase producing bacterium isolated from rhizosphere of maize in Northeast China. | Gao JL, Xue J, Sun YC, Xue H, Wang ET, Yan H, Tong S, Wang LW, Zhang X, Sun JG | Antonie Van Leeuwenhoek | 10.1007/s10482-020-01425-2 | 2020 | Bacterial Typing Techniques, Base Composition, Carbon-Carbon Lyases/*biosynthesis, China, DNA, Bacterial/genetics, Fatty Acids/analysis, Mesorhizobium/*classification/*enzymology/genetics/*isolation & purification, Phosphatidylethanolamines, *Phylogeny, *Rhizosphere, Soil Microbiology, Ubiquinone/chemistry, Zea mays/*microbiology | Enzymology |
Reference
| @id | authors | title | doi/url | ID_cross_reference | pubmed |
|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
| 29485 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 25885 | 28776041 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |